Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40720 481 / 5e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21300 480 / 1e-156 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 475 / 2e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 447 / 3e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 439 / 2e-141 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 440 / 7e-141 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 439 / 8e-141 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G63370 438 / 3e-140 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 436 / 5e-138 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 426 / 2e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 499 / 2e-162 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 498 / 2e-162 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G052200 [exp] 496 / 2e-162 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 496 / 3e-160 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 491 / 2e-159 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 480 / 3e-156 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G156800 [exp] 470 / 4e-153 AT4G21300 842 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 474 / 1e-152 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 461 / 1e-148 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027366 [exp] 836 / 0 AT2G40720 328 / 7e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 484 / 5e-156 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008967 [exp] 473 / 7e-154 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 464 / 1e-149 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 458 / 3e-147 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 465 / 2e-146 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014594 [exp] 446 / 1e-144 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 448 / 5e-144 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 439 / 1e-141 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 441 / 2e-141 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G258500.1 pacid=42791502 polypeptide=Potri.001G258500.1.p locus=Potri.001G258500 ID=Potri.001G258500.1.v4.1 annot-version=v4.1 ATGGACATTTCTCTCTGTTTTAAACCTCGAAGCCCTTCTCTTATACCCAAACAAACCAACATCAACACAGACCCTAAAAGGGACTGGAATGCAATCATGA AAAACCACGCCAGGCTCAAAAATGACCATGCCATTCTTTCTACATATACCCAAATGGAATCTTTTGGCATTGCACCAAATAACACAACCCTGCCTCTCAT TTTCAAGGCCTGTTCGAGGCTCAATGACGTTGAGAGAGGCAGAAGGGTGCATTCTAGTATTCAGGGTACTAACTTGATCAAAGATGTTCGAGTTGGGACA GCTGTTGTTGATTTCTATTGCAAATGTGGGTTGCTTGAAGAAGCTAACCAACTGTTTGGTAAAATGACTCAGAGAGATTTGGTTTTGTGGAATGCAATGA TATCTGGGTTTGTGGGCTGTGGTTTTTATGGGGAGGCAATTGGATTGTTCAGAAAGATGAAAAGTGAGGGTTTTGAACTAAATTCACGTACTTTGGTGGC ATTGATTTTGGCATGTGAGGGGTTATTAGAATTGAGGTTAGGGAAGGAGATACATGGGTATTGGTTGAGGAATGGATATTTTGATTGTCATCCTCATGTG GGTACTGCTTTGATTGGGTTCTATTTGAATTTTGATGTGAGAGTTTCGAGTCTTGTGTTTGATTTGATGGTTATGAGAAGTGAAGTGAGTTGGAATGCAA TGATTACTGGGTTTCTTGATTCAGGGGATTCGGTGAAAGCTTTGGAGCTTTTTGTTCGGATGCTAGAGGATGGGGTTAAGACTGATTTGGTTACCATACT GGTCGTGGTTCAAGCGTGTGCAGAATTTGGATATCTCAAACTGGGGATGCAAATTCATCAAATGGCTATTAAATTTAGCTATAGTAATGATTTGTTCATA GTAAATGCATTGCTGAACATGTATAGTAAGATATCAAGTTCAGAATTAGCACGCAAGTTATTTGATATCACTACAGTTCGTGATGCTGCCCTGTGGAATT CTATGATTTCTGCATACATTGAATATGGATGCTATGAAGAAGCTAGTGATGTTTTTAATCGAATGCGAGAAGAAATAAGCCCCGATGAAAGAACTATTGT TGTTATGCTTTCTTTGTGTAGAGAGTTAGATGATGGCTTGAAAAAGGGTAAAAGCTTACATGCTCATGCATGCAAGAGTGGAATGAGGATGGATGTTTCT ATTGGAAATGCGTTTTTGATCATGTACACAGATCTAAATTGTGTTGAAGCTGCATGGAAGGTTTTCAGTGTGATGAGTGATGTAGATGTCATCTCATATA ACACTTTGATCTTGGCACTGGCCAGTGCCCATTTGAGGGGTGAGGCTTGGGAATTATTTCAAATCATGCAAGCATCTCAAGTGGAACCAAACTCTCACAC AATGATCTCTCTTCTTGCTGCTTGTGGAGATGAAACATGTCTAAAAATAGGACGGTCCATCCATGGTTTTTCAATAAAGCATGGTTTTGAAATAAATCTA CCCTTGAACACTGCGCTCACTGATATGTACATGAACTGTGGTGATGAACCGAAAGCTAGAAGTCTTTTTGAGGCCTGTCTCGCTAGAGATTTGATATCGT GGAATGCTATGATTTCCAGTTACATTAAAATCAACCAAAGCAATGAAGCTTTGTTATTTTTCAGTCGTATGATTTCAGAGGTGGAACCTAACGTGATCAC AATCTTAAATGTTCTCTCAACATGTACTGACCTCGCCAATCTGCCTCAAGGCCGGTGCCTGCATGGTTATGCCATACGGAGGTTTTCCCCTTCTGATTCA AATGTGTCTCTTGCAAATGCTATAATAACAATGTACACAAGATGTGGTAGCATGCTAACTGCTGAAAAGATCTTTAAAAGCTTACCAAAGAGAAACATCA TCTCTTGGAATGCCATGATAACCGGCTATGGTACACATGGTCGTGGTTATGATGCCATCATTGCCTTCAAGCAGATGTTAGAAGAAGGTTTCCAGCCAAA TGAGGTGACTTTCTTATCTGTACTATCTGCTTGTCGCCATGCTGGCATGATAGAGCAGGGTTTGGAGCTCTTTTATTCCATGGTTCAGGATTTCAAGATG ATTCCTGCGCTTGAACATTATGGCTGTGTAGTTGATCTACTTGGTCGTGGCGGATGCTTAGATGAAGCTAGAGAATTTATCAATTCTATGCCTATTGAAC CAGATGCATCAGTGTGGAGAGCACTGCTCAGTGCTTGTCGATTTCATTCTAACCCAAAACTAGCTTCTGCTATTTTTGAAAACCTTGTCAAATTAGAACC AGCAAATGCAGGAAATTATGTTTTGCTATCCAATATATATGCTGAAGCAGGTCATTGGTCAGAGGTAAGACAAATAAGAACATTTCTCAAAGAGAAGGGT TTAAGAAAGCCACCAGGAACTAGTTGGATCATCGTAAGGGATCAGAGTCACTCTTTTACCGCTGCAGATACATCACACCCTCAATCTGACAAAATTTATG CAAATTTGAATTCTTTGCTGACCTTGATTAGAGAATCTGGATATGTTACTGGTTTTTATTTGGTATTTCATGATGAAGAGGATTAG
AA sequence Show only first row Show all	>Potri.001G258500.1 pacid=42791502 polypeptide=Potri.001G258500.1.p locus=Potri.001G258500 ID=Potri.001G258500.1.v4.1 annot-version=v4.1 MDISLCFKPRSPSLIPKQTNINTDPKRDWNAIMKNHARLKNDHAILSTYTQMESFGIAPNNTTLPLIFKACSRLNDVERGRRVHSSIQGTNLIKDVRVGT AVVDFYCKCGLLEEANQLFGKMTQRDLVLWNAMISGFVGCGFYGEAIGLFRKMKSEGFELNSRTLVALILACEGLLELRLGKEIHGYWLRNGYFDCHPHV GTALIGFYLNFDVRVSSLVFDLMVMRSEVSWNAMITGFLDSGDSVKALELFVRMLEDGVKTDLVTILVVVQACAEFGYLKLGMQIHQMAIKFSYSNDLFI VNALLNMYSKISSSELARKLFDITTVRDAALWNSMISAYIEYGCYEEASDVFNRMREEISPDERTIVVMLSLCRELDDGLKKGKSLHAHACKSGMRMDVS IGNAFLIMYTDLNCVEAAWKVFSVMSDVDVISYNTLILALASAHLRGEAWELFQIMQASQVEPNSHTMISLLAACGDETCLKIGRSIHGFSIKHGFEINL PLNTALTDMYMNCGDEPKARSLFEACLARDLISWNAMISSYIKINQSNEALLFFSRMISEVEPNVITILNVLSTCTDLANLPQGRCLHGYAIRRFSPSDS NVSLANAIITMYTRCGSMLTAEKIFKSLPKRNIISWNAMITGYGTHGRGYDAIIAFKQMLEEGFQPNEVTFLSVLSACRHAGMIEQGLELFYSMVQDFKM IPALEHYGCVVDLLGRGGCLDEAREFINSMPIEPDASVWRALLSACRFHSNPKLASAIFENLVKLEPANAGNYVLLSNIYAEAGHWSEVRQIRTFLKEKG LRKPPGTSWIIVRDQSHSFTAADTSHPQSDKIYANLNSLLTLIRESGYVTGFYLVFHDEED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40720			Tetratricopeptide repeat (TPR)...		Potri.001G258500 [exp]	0	1
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	3.74	0.9606
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	5.19	0.9508
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Potri.018G092400 [exp]	6.00	0.9499
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Potri.015G091700 [exp]	6.63	0.9515
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Potri.003G058700 [exp]	7.41	0.9494
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.012G018800 [exp]	7.93	0.9473
AT3G14900		EMB3120	EMBRYO DEFECTIVE 3120, unknown...		Potri.001G390600 [exp]	12.00	0.9373
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	12.84	0.9400
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.004G237000 [exp]	14.14	0.9426
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	14.42	0.9439

Compare expression of checked genes

Potri.001G258500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.