Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50920 1000 / 0 Nucleolar GTP-binding protein (.1) AT1G10300 895 / 0 Nucleolar GTP-binding protein (.1) AT1G80770 127 / 5e-31 PDE318 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G23860 90 / 4e-20 GTP-binding protein-related (.1) AT4G39520 49 / 5e-06 GTP-binding protein-related (.1) AT1G17470 49 / 7e-06 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT1G72660 49 / 9e-06 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G07615 48 / 2e-05 GTP-binding protein Obg/CgtA (.1) AT1G78010 47 / 4e-05 tRNA modification GTPase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054000 [exp] 1162 / 0 AT1G50920 1048 / 0.0 Nucleolar GTP-binding protein (.1) Potri.002G134900 [exp] 124 / 3e-30 AT1G80770 576 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G239600 [exp] 51 / 2e-06 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.007G080900 [exp] 50 / 4e-06 AT4G39520 647 / 0.0 GTP-binding protein-related (.1) Potri.001G170300 [exp] 48 / 2e-05 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.003G063500 [exp] 47 / 2e-05 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002558 [exp] 1036 / 0 AT1G50920 1039 / 0.0 Nucleolar GTP-binding protein (.1) Lus10027370 [exp] 1019 / 0 AT1G50920 1034 / 0.0 Nucleolar GTP-binding protein (.1) Lus10038748 [exp] 882 / 0 AT1G50920 940 / 0.0 Nucleolar GTP-binding protein (.1) Lus10007959 [exp] 516 / 0 AT1G50920 498 / 2e-174 Nucleolar GTP-binding protein (.1) Lus10039110 [exp] 497 / 3e-173 AT1G50920 489 / 1e-170 Nucleolar GTP-binding protein (.1) Lus10007958 [exp] 303 / 4e-97 AT1G50920 322 / 7e-105 Nucleolar GTP-binding protein (.1) Lus10019508 [exp] 122 / 2e-28 AT1G80770 560 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043354 [exp] 120 / 8e-28 AT1G80770 550 / 0.0 pigment defective 318, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10005800 [exp] 49 / 9e-06 AT4G39520 682 / 0.0 GTP-binding protein-related (.1) Lus10037676 [exp] 49 / 1e-05 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06858 [poplar] [flax] NOG1 Nucleolar GTP-binding protein 1 (NOG1) CL0023 [poplar] [flax] PF08155 [poplar] [flax] NOGCT NOGCT (NUC087) domain
Representative CDS sequence Show only first row Show all	>Potri.001G258900.3 pacid=42791771 polypeptide=Potri.001G258900.3.p locus=Potri.001G258900 ID=Potri.001G258900.3.v4.1 annot-version=v4.1 ATGGTGCAGTATAATTTTAAGAAGATTACTGTGGTCCCTAATGGGAAGGATTTTGTTGATATCATCCTTTCTCGGACCCAAAGGCAAACACCAACAGTGG TCCATAAGGGTTATGCTATTTCTCGGCTTCGGCAGTTTTATATGCGGAAGGTGAAGTATACTCAGCAGAATTTCCATGAGAAGCTTTCAACAATCATTGA TGAGTTCCCTCGTCTTGATGACATCCATCCGTTTTATGGTGACCTTCTTCATGTGCTGTACAATAAGGATCATTACAAGCTTGCCCTTGGTCAGATTAAT ACTGCCAGGAATCTTATTAGCAAGATTGCTAAGGATTATGTCAAGTTGTTAAAGTATGGTGATTCGTTGTATCGATGCAAGTCTCTGAAGGTTGCTGCTC TTGGGCGAATGTGCACTGTTATGAAGAGGATTGGCCCAAGTTTAGCTTACTTGGAGCAAATTAGACAGCATATGGCAAGGCTACCTTCAATTGATCCAAA TACTCGGACAGTCTTGATTTGCGGGTATCCTAATGTTGGGAAGAGCTCTTTCATCAACAAGATCACCAGGGCAGATGTGGATGTGCAACCTTATGCATTC ACTACCAAGTCATTGTTTGTAGGCCACACAGATTACAAGTATCTGAGGTACCAAGTGATTGATACACCAGGGATTTTGGATCGGCCTTTTGAGGATCGTA ACATTATTGAGATGTGCAGCATCACAGCTCTGGCACATCTTCGAGCGGCTGTGTTATTCTTCTTGGACGTCTCTGGGTCATGTGGATATAGCATTGCTCA ACAGGCTGCTTTATTTCATAGCATTAAGTCTTTGTTTATGAATAAACCATTGACCATTGTCTGCAACAAGACCGATTTGCAACCACTTGAAGGGATTTCT GAGGAAGACATGAAGTTGGTCATGGAGATGAAATCAGAAGCTATGAAGACACTGGTTGCTCAAGGAGGTGAAGCTACCAATGATGCTGATGTGCTTTTGA CTATGAGTACCTTGACCGAGGAGGGGGTGATTGCTGTGAAGAACGCTGCTTGCGAGAGATTGCTGAATCAGCGAGTGGAAATGAAGATGAAATCTAAAAA AATTAATGACTGCTTGAATCGGTTCCATGTAGCAATGCCAAAGCCACGTGATCAAAAGGAAAGGCCACCTTGTATACCTCAACCAGTTTTGGAAGCTAAA GCTAAGGAGGCAGCAGAGAAGGAGAAAAGAAAAACAGAAAAGGATTTGGAAGATGAAAATGGTGGTGCTGGTGTATACTCTGCCAGTTTGAAGAAGAATT ACATCTTAGCCCATGATGAATGGAAAGAAGATGTACTCCCGGAGATTCTTGATGGCCACAATGTGTATGACTTCATTGATCCTGATATTTTGCAAAGGCT CGAGGAGTTGGAACAAGAAGAAGGTATCCGACAGGCAGAAGAAGGAGATGACGATTTTGAGATGGATGGTGAGGAATTAACTGCTGAAGAGAAAGAAGCC TTGGCTGAGATCAGGAAAAAGAAAAGCTTGCTCATTCAAGAGCATAGAATGAAGAAAAGCACTGCAGAGAGCCGGCCTACTGTACCTAGAAAATTTGACA AGGACAGAAAGTTCACAACAAAAAGAATGGGCAGGCAGCTGTCAGCTATGGGAGTGGATCCTTCTAAAGCAATTAATCGTCTTCGTGAGAGGTCACTCTC TACGAGGGGCCGCAAAAGAGAGAGGTCAACTGACAGGGGACACGATGATGGTGATGCTATGGATATGGATGTGGACCAGCCAAATAAGAAGCTGCGTTTG AGATCCACATCTCGGTCTAGGTCAAGGTCACGGCCTCCAAATGAGGTTGTTCCAGGAGAGGGCTTCAAGGACTCGGCTCAAAAAAGCAAGGCTCTTAAGC TTTTCAAGAACTCTGCTAAAAAGAGGAACAAGGATGCTAGACGTGGAGAAGCAGATAGAGTTATTCCTACACTCAAACCAAAGCACTTGTTCTCTGGGAA ACGTTCCATTGGAAAAACACAGAGGCGTTAA
AA sequence Show only first row Show all	>Potri.001G258900.3 pacid=42791771 polypeptide=Potri.001G258900.3.p locus=Potri.001G258900 ID=Potri.001G258900.3.v4.1 annot-version=v4.1 MVQYNFKKITVVPNGKDFVDIILSRTQRQTPTVVHKGYAISRLRQFYMRKVKYTQQNFHEKLSTIIDEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQIN TARNLISKIAKDYVKLLKYGDSLYRCKSLKVAALGRMCTVMKRIGPSLAYLEQIRQHMARLPSIDPNTRTVLICGYPNVGKSSFINKITRADVDVQPYAF TTKSLFVGHTDYKYLRYQVIDTPGILDRPFEDRNIIEMCSITALAHLRAAVLFFLDVSGSCGYSIAQQAALFHSIKSLFMNKPLTIVCNKTDLQPLEGIS EEDMKLVMEMKSEAMKTLVAQGGEATNDADVLLTMSTLTEEGVIAVKNAACERLLNQRVEMKMKSKKINDCLNRFHVAMPKPRDQKERPPCIPQPVLEAK AKEAAEKEKRKTEKDLEDENGGAGVYSASLKKNYILAHDEWKEDVLPEILDGHNVYDFIDPDILQRLEELEQEEGIRQAEEGDDDFEMDGEELTAEEKEA LAEIRKKKSLLIQEHRMKKSTAESRPTVPRKFDKDRKFTTKRMGRQLSAMGVDPSKAINRLRERSLSTRGRKRERSTDRGHDDGDAMDMDVDQPNKKLRL RSTSRSRSRSRPPNEVVPGEGFKDSAQKSKALKLFKNSAKKRNKDARRGEADRVIPTLKPKHLFSGKRSIGKTQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50920			Nucleolar GTP-binding protein ...		Potri.001G258900 [exp]	0	1
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	4.58	0.8267
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Potri.009G105300 [exp]	5.19	0.8034
AT1G15420			unknown protein		Potri.001G173300 [exp]	5.47	0.8059
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Potri.005G228200 [exp]	6.24	0.7273
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	7.74	0.7819
AT1G71850			Ubiquitin carboxyl-terminal hy...		Potri.013G115500 [exp]	9.48	0.7957
AT1G60640			unknown protein		Potri.017G121000 [exp]	9.74	0.7502
AT3G59820			LETM1-like protein (.1.2)		Potri.007G142000 [exp]	19.07	0.7624
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	21.00	0.7810
AT1G72440		SWA2, EDA25	SLOW WALKER2, embryo sac devel...		Potri.001G164100 [exp]	22.58	0.7539

Compare expression of checked genes

Potri.001G258900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.