Plant FIBer expression Database

Potri.001G259000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G51310 682 / 0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039111
[exp]
722 / 0 AT1G51310 667 / 0.0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
Lus10038747
[exp]
722 / 0 AT1G51310 669 / 0.0 transferases;tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0039 HUP PF03054 tRNA_Me_trans tRNA methyl transferase
Representative CDS sequence
>Potri.001G259000.3 pacid=42789585 polypeptide=Potri.001G259000.3.p locus=Potri.001G259000 ID=Potri.001G259000.3.v4.1 annot-version=v4.1
ATGTTGCTGAGACTGGGAGCGCTGACACCGCTTCTCCGCCCGTCTCTCTTCTCTCCGAAACCCATCCTTCTTTCTCCTCTAATAACCGCCAAACCCTTCT
TTTCTCTCTCCTCCTTCTCTACGGCACCGTTTCAATCGTCTTTGGTATCTCATTCTTTCAATCCAAAACCAACAACCCTCTTCGATAGTGGCAAGAATGC
CATCTCTGTTGACCCTTATTATTTATCCTGCTGTATGGCTGACAAAGATAAGCCTCTGAGAATTGCCGTCCTCCTCAGCGGCGGCGTTGACAGTAGCGTT
GCCCTTCGGCTTTTGCATGCTGCTGGGCACCACTGCACTGCTTTCTACCTCAAAATTTGGTTCCAAGAAGATTTTAACAACTTTTGGTCAGAATGTCCAT
GGGAAGAGGATTTGAAGTTTGCAAAAGGCGTCTGTGATCAGGTTGGTGTCCCATTAGAAGTTGTCCATTTGACTGACGAATATTGGAGTAATGTGGTGTC
ATATATTATTGAAGAGTATCGATGTGGTCGCACTCCCAATCCTGATGTTCTTTGCAACACAAGAATTAAGTTTGGTGCATTCATGGATGCCATCAACAAC
ATGGAATTTGATTATGTTGCTTCAGGGCATTATGCCCATGTCATTCATCCAGTTTCGGATCAAATAAATAAGCCATCTGTTTTAGAACTCTCAAAGGACA
AGCTCAAGGATCAAACGTATTTTCTCTCACATTTGACACAAGCTCAGCTTAAACGTCTTATTTTTCCACTTGGTTGTATTCCAAAGGAAGAAGTTCGCAA
TCTTGCCTCAAAATTTGATTTGCCTAACAAAGACAGAAAGGATTCACAAGGAATATGCTTCCTTGGAAAGATAAAATTTAGCGAATTTGTTGGGAGACAT
ATTGGAGAGAGTGAAGGTGTGATTTTGGAAGCTGAGACAGGAGATTTCCTTGGCATTCATCGGGGTTTTTGGTTCTACACAATTGGTCAACGTCAAGGCT
TACGCCTTCCTGGGGGACCGTGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTGTTTGTGTCAAGAAATTATTTCTCGTTAGACAAAAGAAGGCG
CTCATTCCGTGTTGGCTCCTTGAAATGGCTTAGCGGGTCTCCAACTGATATGACCACTCAGCTTCAGTGTAAGGTCAGACATGGCCCCACATTTTATGAT
TGCAGTGTAAAGATAGAACTTGGTGAAGATAGTCCTGAAGAGGTTGTGGCTGTCCACTTATGTGAAGATGATCAAGGTCTAGCAGCAGGGCAGTTTACAG
CTTTCTACCAGGGAAGAACTTGCATAGGTTCTGGTGTGATTTTGGAGTCCTGGGATGATAAAGGTTTTCCTGTATGTCAAAAGGCTCTTGAATTAGCCAG
ACTAGAAGATAAATCAAAGCTTGGGAAACCAGTTAAGATAAAGGTAAAACCAGAGACTTCCGACCAGGAATCTGTTCAGAAGGATGGCATAGAACCTGAT
AAAGGATTGGCTGAACCACGGGTTGCTGTCACAGGTTAA
AA sequence
>Potri.001G259000.3 pacid=42789585 polypeptide=Potri.001G259000.3.p locus=Potri.001G259000 ID=Potri.001G259000.3.v4.1 annot-version=v4.1
MLLRLGALTPLLRPSLFSPKPILLSPLITAKPFFSLSSFSTAPFQSSLVSHSFNPKPTTLFDSGKNAISVDPYYLSCCMADKDKPLRIAVLLSGGVDSSV
ALRLLHAAGHHCTAFYLKIWFQEDFNNFWSECPWEEDLKFAKGVCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAINN
MEFDYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLIFPLGCIPKEEVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRH
IGESEGVILEAETGDFLGIHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGSLKWLSGSPTDMTTQLQCKVRHGPTFYD
CSVKIELGEDSPEEVVAVHLCEDDQGLAAGQFTAFYQGRTCIGSGVILESWDDKGFPVCQKALELARLEDKSKLGKPVKIKVKPETSDQESVQKDGIEPD
KGLAEPRVAVTG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G51310 transferases;tRNA (5-methylami... Potri.001G259000
[exp]
0 1
AT1G21640 ATNADK2, NADK2,... NAD kinase 2 (.1.2) Potri.005G182600
[exp]
3.00 0.8780 Pt-NADK2.1
AT5G24490 30S ribosomal protein, putativ... Potri.012G005800
[exp]
8.24 0.8747
AT5G20040 ATIPT9 ARABIDOPSIS THALIANA ISOPENTEN... Potri.001G376600
[exp]
14.96 0.8255
AT5G17400 ER-ANT1 endoplasmic reticulum-adenine ... Potri.012G062500
[exp]
15.03 0.7776
AT3G47390 PHS1 PHOTOSENSITIVE 1, cytidine/deo... Potri.019G054000
[exp]
15.62 0.7756
AT1G66750 CDKD1;2, CAK4AT... CYCLIN-DEPENDENT KINASE D1;2, ... Potri.016G106725
[exp]
21.90 0.7871
AT3G12930 Lojap-related protein (.1) Potri.001G458600
[exp]
23.10 0.8618
AT3G61860 ATRSP31, At-RS3... arginine/serine-rich splicing ... Potri.002G175000
[exp]
29.05 0.7514 Pt-RSP31.2
AT5G37360 unknown protein Potri.013G050300
[exp]
31.00 0.8093
AT3G52170 DNA binding (.1.2) Potri.008G029500
[exp]
45.29 0.7792

Potri.001G259000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.