Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36250 556 / 0 ALDH3F1 aldehyde dehydrogenase 3F1 (.1) AT1G44170 466 / 1e-161 ALDH4, ALDH3H1 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) AT4G34240 429 / 4e-146 ALDH3I1 aldehyde dehydrogenase 3I1 (.1.2) AT3G66658 154 / 8e-41 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G79440 139 / 2e-35 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT1G74920 124 / 2e-30 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 117 / 4e-28 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G23800 112 / 2e-26 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 103 / 2e-23 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G24503 92 / 7e-20 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G017100 [exp] 571 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Potri.001G412900 [exp] 469 / 1e-161 AT4G34240 678 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.005G069800 [exp] 464 / 2e-159 AT4G34240 626 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Potri.002G081800 [exp] 456 / 2e-157 AT1G44170 731 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.005G179300 [exp] 451 / 1e-155 AT1G44170 736 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Potri.008G106000 [exp] 157 / 1e-41 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.010G174000 [exp] 126 / 4e-31 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.012G075600 [exp] 122 / 4e-30 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 121 / 1e-29 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002557 [exp] 748 / 0 AT3G12080 869 / 0.0 embryo defective 2738, GTP-binding family protein (.1.2) Lus10031280 [exp] 720 / 0 AT4G36250 555 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10031849 [exp] 719 / 0 AT4G36250 550 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10041806 [exp] 524 / 0 AT4G36250 640 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10028357 [exp] 516 / 0 AT4G36250 635 / 0.0 aldehyde dehydrogenase 3F1 (.1) Lus10029684 [exp] 461 / 1e-159 AT1G44170 742 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10027372 [exp] 454 / 1e-158 AT4G36250 351 / 4e-118 aldehyde dehydrogenase 3F1 (.1) Lus10015688 [exp] 442 / 2e-151 AT4G34240 674 / 0.0 aldehyde dehydrogenase 3I1 (.1.2) Lus10025681 [exp] 439 / 1e-150 AT1G44170 743 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3) Lus10018153 [exp] 438 / 2e-150 AT1G44170 734 / 0.0 aldehyde dehydrogenase 4, aldehyde dehydrogenase 3H1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.001G259100.7 pacid=42787793 polypeptide=Potri.001G259100.7.p locus=Potri.001G259100 ID=Potri.001G259100.7.v4.1 annot-version=v4.1 ATGGAGGGTGTGGAGGGTTTGGAGAGTGATTTAGAGGGCATGAGACAGTATTTTAGGAGTGGAAAGACCAAAGATGTAGCTTGGAGGCAATCCCAGCTGA AAGGATTGCTCTCGTTTATTAAGGAAACAGAGAGAGACATGTGCAAGGCTTTAAAGGAAGATTTAGGGAAGCATCATGTTGAGGCATACAGAGACGAGGT AGGGATATTGACAAAATCCATCAATTTTGCACTGCACGGATTAAAAGAATGGATGTCAAGCAAGAAGGCCAAGTTGCCGAGAGTTGCCCTGTTATCATCT GCAGAATTGGTACCTGAACCTCTTGGTTTTGTCCTAATTATTTCATCATGGAATTTTCCTTTTGGACTATCCTTGGAACCAATGATAGGAGCAATAGCTG CAGGTAACACGATGGTTTTAAAACCTTCGGAATTAGCTCCTGCAAGTGCTTCTCTTCTAGCAAATGTTTTGCCAACTTACCTAGACAATTCAGCTGTCAA GGTTATCCAAGGAGGACCAGCTGTGGGTGAACGTCTCCTACAGCAGAAATGGGACAAGATCTTTTTTACAGGAAGTGCACGAGTAGGACGAATAATTATG TCAGCAGCTGTGAAACATCTCACACCTGTTGCTCTAGAATTGGGAGGTAAATGCCCTGCTGTTGTGGATTCTGTATCATCTTCATGGGATACAAAGGTGA CTGTGAACAGAATTTTAGTGTCAAAATTTGGAGCCTGTGCTGGTCAAGCATGTATAGCAATTGATTATATCCTAGTGGAAAAAAGATTTGCTTCCATCTT GGTGGAATTAATGAAAGTTATGATCAAGAAAATGTTTGGTGAAAACCCAAGAGAGACAAATACTGTTGCAAGAATAGTCAACGAACAACATTTCTTGAGA TTGAAGAATCTTCTAAGCGACTCAGCCGTGCAAAATTCCATTGTCTATGGAGGTTCAATGGATGAAAAGAATCTGTTCGTTGAGCCAACAATCCTGGTAG ATCCTCCACTTGATGCAGCAATAATGACAGAAGAGATATTTGGTCCTTTGCTTCCCATAATCACACTGGACAAGGTTGAGGACAGTATTGCTTTTATCAA CTCAAAGCCTAAGCCACTTGCAATTTATGCCTTCACCAACAATGAAAAATTCAGGAGAAGAATGTTATCTGAAACATCGTCAGGAAGCTTGGTATTCAAC GATGCAGTTATTCAGTATGCAGCTGATGCCTTACCATTTGGAGGGATTGGAGAAAGTGGGATTGGCAAGTATCATGGGAAATTCTCATTCGACACGTTTA GCCACTACAAGGCAGTGACAAGAAGAAGCTTCCTAACTGATTTTTGGTTCAGATTTCCTCCATGGAATGATTACAAGCTGTTGCTTTTGGAAGCGACTTA CAATTATGACTATCTTGGAATGCTCCTGGTCATTCTTGGCTTAAAGAGGCGAAGATAG
AA sequence Show only first row Show all	>Potri.001G259100.7 pacid=42787793 polypeptide=Potri.001G259100.7.p locus=Potri.001G259100 ID=Potri.001G259100.7.v4.1 annot-version=v4.1 MEGVEGLESDLEGMRQYFRSGKTKDVAWRQSQLKGLLSFIKETERDMCKALKEDLGKHHVEAYRDEVGILTKSINFALHGLKEWMSSKKAKLPRVALLSS AELVPEPLGFVLIISSWNFPFGLSLEPMIGAIAAGNTMVLKPSELAPASASLLANVLPTYLDNSAVKVIQGGPAVGERLLQQKWDKIFFTGSARVGRIIM SAAVKHLTPVALELGGKCPAVVDSVSSSWDTKVTVNRILVSKFGACAGQACIAIDYILVEKRFASILVELMKVMIKKMFGENPRETNTVARIVNEQHFLR LKNLLSDSAVQNSIVYGGSMDEKNLFVEPTILVDPPLDAAIMTEEIFGPLLPIITLDKVEDSIAFINSKPKPLAIYAFTNNEKFRRRMLSETSSGSLVFN DAVIQYAADALPFGGIGESGIGKYHGKFSFDTFSHYKAVTRRSFLTDFWFRFPPWNDYKLLLLEATYNYDYLGMLLVILGLKRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.001G259100 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G414000 [exp]	1.00	0.9989
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Potri.017G086300 [exp]	2.00	0.9976
					Potri.006G027800 [exp]	2.44	0.9980
					Potri.006G028601 [exp]	3.46	0.9976
AT1G75280			NmrA-like negative transcripti...		Potri.013G103701 [exp]	3.87	0.9940
AT2G26250		KCS10, FDH	FIDDLEHEAD, 3-ketoacyl-CoA syn...		Potri.006G218000 [exp]	4.00	0.9958
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Potri.005G109300 [exp]	5.47	0.9965	MDPIP1.1
AT5G59310		LTP4	lipid transfer protein 4 (.1)		Potri.016G135700 [exp]	10.95	0.9949
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	11.22	0.9949
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G115800 [exp]	11.31	0.9936	CPRD49.1

Compare expression of checked genes

Potri.001G259100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.