Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51260 521 / 0 LPAT3 lysophosphatidyl acyltransferase 3 (.1) AT3G57650 495 / 7e-176 LPAT2 lysophosphatidyl acyltransferase 2 (.1) AT3G18850 142 / 9e-39 LPAT5 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) AT1G75020 134 / 8e-36 LPAT4 lysophosphatidyl acyltransferase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G055000 [exp] 497 / 6e-177 AT3G57650 587 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.016G053000 [exp] 498 / 2e-176 AT3G57650 606 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Potri.009G054500 [exp] 352 / 1e-119 AT3G57650 374 / 2e-128 lysophosphatidyl acyltransferase 2 (.1) Potri.002G133100 [exp] 149 / 4e-41 AT1G75020 536 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Potri.009G112307 [exp] 145 / 6e-40 AT3G18850 493 / 1e-175 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.T125204 [exp] 145 / 6e-40 AT3G18850 493 / 9e-176 lysophosphatidyl acyltransferase 5 (.1.2.3.4.5) Potri.014G040600 [exp] 142 / 2e-38 AT1G75020 485 / 3e-172 lysophosphatidyl acyltransferase 4 (.1.2) Potri.009G054450 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026312 [exp] 511 / 0 AT3G57650 615 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10042356 [exp] 506 / 4e-180 AT3G57650 611 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10011298 [exp] 504 / 2e-179 AT3G57650 609 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10040492 [exp] 501 / 2e-178 AT3G57650 610 / 0.0 lysophosphatidyl acyltransferase 2 (.1) Lus10027375 [exp] 498 / 8e-177 AT1G51260 495 / 1e-175 lysophosphatidyl acyltransferase 3 (.1) Lus10002556 [exp] 497 / 3e-176 AT1G51260 496 / 8e-176 lysophosphatidyl acyltransferase 3 (.1) Lus10018803 [exp] 157 / 5e-44 AT1G75020 531 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2) Lus10032727 [exp] 154 / 8e-43 AT1G75020 530 / 0.0 lysophosphatidyl acyltransferase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase CL0228 [poplar] [flax] PF16076 [poplar] [flax] Acyltransf_C Acyltransferase C-terminus
Representative CDS sequence Show only first row Show all	>Potri.001G259200.3 pacid=42791347 polypeptide=Potri.001G259200.3.p locus=Potri.001G259200 ID=Potri.001G259200.3.v4.1 annot-version=v4.1 ATGGCGTGGCCAGCTGTACTCGTTATTGTCCCTGTTGGAATCATTTTCATACTCTCTGGTCTCATTGTTAATCTCATCCAGGCAGTTCTTTTCATCCTTG TTCGTCCCGTGTCCAAGAGTCTGCACAGAAGGATCAACAAAATAGTTGCAGAATTGCTTTGGTTGGAGCTCATAGTGCTCGTTGATTGGTGGGCAAATCT GAAGATTGAAGTGTATGCAGATGATGAAACTTTTGAATTGCTAGGTAAAGAACATGCGCTTGTCATTAGCAATCACAACAGTGACCTTGATTGGCTTGTC GGATGGATCTTAGCTCAGCGCTCAGGTTGCCTTGGCAGTGCACTGGCTGTAATGAAGAAAGAAGCTAAAGTCCTGCCTATTATTGGCTGGTCAATGTGGT TTTCTGATTATGTGTTTCTGGAAAGAAGCTGGGGTAAGGATGAAAGAATATTGCAGTCAGGTTTTGAACGGCTAGCAGATTTTCCGATGCCTTTTTGGCT GGCTCTTTTTGTGGAGGGAACTCGCTTCACACAGGCTAAACTTCTAGCGGCACAGGAATTTGCTGCTTCCAGAGGAATTCCTGTTCCTAGAAATGTTTTG ATTCCACGTACCAAGGGTTTCGTGTCAGCAGTAACTCATTTGCGTTCATTTGTTCCAGCAATTTATGATGCAACAGTGGCTGTTGCGAATAGTCAGCCTG CACCAACATTCCTAAGAATATTCAGGGGTCAATCCTCTGTGATAAAGGTGCTTTTGGAGCGACATTCAATGCAGGAACTTCCAGAAACAGCCGATGGAAT AGCTCAATGGTGCAAAGATGCATTTGTCACCAAGGATGCTGTGTTGGAGAAATATTTTTCCAAGGACATCTTCCGTGATAAGAAACTTCAAGACATTGGC CGACCTAAAAAGTCTTTGTTTGTTATGATTTTCTGGTCAAGTCTGCTTGCCTATGCCACTGTCAGGTTATTCCAATGGCTGTCATTATTCCTAGCCTCAT GGGAAGTCATTACATTTTCAATTGCTTTCTTGTTCCTCGTGACAATTATTATGCAAATTCTTATTCAATCATCGGAGTCAGAGCGCTCTACACCTGCAAC CAATTTCACATTATCGGAAGGAACGAGGCAGAGGCTCCTTCCAAGATAA
AA sequence Show only first row Show all	>Potri.001G259200.3 pacid=42791347 polypeptide=Potri.001G259200.3.p locus=Potri.001G259200 ID=Potri.001G259200.3.v4.1 annot-version=v4.1 MAWPAVLVIVPVGIIFILSGLIVNLIQAVLFILVRPVSKSLHRRINKIVAELLWLELIVLVDWWANLKIEVYADDETFELLGKEHALVISNHNSDLDWLV GWILAQRSGCLGSALAVMKKEAKVLPIIGWSMWFSDYVFLERSWGKDERILQSGFERLADFPMPFWLALFVEGTRFTQAKLLAAQEFAASRGIPVPRNVL IPRTKGFVSAVTHLRSFVPAIYDATVAVANSQPAPTFLRIFRGQSSVIKVLLERHSMQELPETADGIAQWCKDAFVTKDAVLEKYFSKDIFRDKKLQDIG RPKKSLFVMIFWSSLLAYATVRLFQWLSLFLASWEVITFSIAFLFLVTIIMQILIQSSESERSTPATNFTLSEGTRQRLLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51260		LPAT3	lysophosphatidyl acyltransfera...		Potri.001G259200 [exp]	0	1
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Potri.018G096700 [exp]	1.73	0.9044
AT2G20840			Secretory carrier membrane pro...		Potri.013G144700 [exp]	3.00	0.9289
AT5G21070			unknown protein		Potri.009G158800 [exp]	3.46	0.9213
AT4G34450			coatomer gamma-2 subunit, puta...		Potri.009G115100 [exp]	6.00	0.8994
AT3G48000		ALDH2A, ALDH2B4	aldehyde dehydrogenase 2A, ald...		Potri.012G078700 [exp]	6.00	0.8866	ALDH1.2
AT5G56020			Got1/Sft2-like vescicle transp...		Potri.011G164900 [exp]	6.24	0.8823
AT3G15410			Leucine-rich repeat (LRR) fami...		Potri.011G121700 [exp]	7.74	0.8734
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	8.36	0.8880
AT4G29340		PRF4	profilin 4 (.1)		Potri.018G057600 [exp]	10.39	0.8750	PRO1.3
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Potri.001G317400 [exp]	10.48	0.8855

Compare expression of checked genes

Potri.001G259200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.