Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18540 54 / 2e-08 RmlC-like cupins superfamily protein (.1) AT4G36700 52 / 1e-07 RmlC-like cupins superfamily protein (.1) AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G054700 [exp] 234 / 4e-75 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G029100 [exp] 55 / 9e-09 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.005G212333 [exp] 45 / 9e-06 AT3G22640 76 / 2e-15 cupin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006420 [exp] 129 / 1e-34 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10041722 [exp] 67 / 1e-12 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10037937 [exp] 62 / 7e-11 AT2G18540 400 / 2e-131 RmlC-like cupins superfamily protein (.1) Lus10011364 [exp] 0 / 1 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00190 [poplar] [flax] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Potri.001G259208.1 pacid=42792813 polypeptide=Potri.001G259208.1.p locus=Potri.001G259208 ID=Potri.001G259208.1.v4.1 annot-version=v4.1 ATGACCAGGCAACAAGAGAGTCCGATAGTTTTCCTAGGTGATTCTAGGGCACCAAGGCCAAGCCCGTGGAGAAAATTCCTTCAACTGAAGGAGCAAGATA GACTACAGCACCTAAAGAGAATGGTGAAATTCCAACAACCACCTAATCAAGAAGAGGAGCAAATGACATGGTCATGGAGGAATCTCTTGAATTCAATATT TGGACAGGAAAATAAGAAAAAATGTGAAAATGGCAAATCCCCTGATTCATTCAATATCTATGATAGACGGCCTAACTTCAGAAACAACTATGGATGGATC ACTGCAATTGATGAGTCTGATTACCAGCCTCTTCGACACTCTGGTATTGGTGTCTGTCTGGTTAACCTCACCGCGGGATCAATGATGGCACCACGTACAT TTGAACCCATCAGCAACAGAGTATGGAATTGTTTTGAGTGGAAGCAGCAGAATACAGATTGTGTTTCCAAATGGAACACAAGTGATGAATGCAAGAGTAA AAGCAGGCGATGCTTTCTGGGTCCCAAGATACTTCCCCTTCTGTCAAATTGCAGCAAAGTCAGGTTCTCTCGAGTTCTTCGGATTCACAACTTCAGCTCG CCAGAACAGGCCACAGCTCTTGATTGGTGCAAGCTCAATTCTTCAAACCATGAGAATCCCTGA
AA sequence Show only first row Show all	>Potri.001G259208.1 pacid=42792813 polypeptide=Potri.001G259208.1.p locus=Potri.001G259208 ID=Potri.001G259208.1.v4.1 annot-version=v4.1 MTRQQESPIVFLGDSRAPRPSPWRKFLQLKEQDRLQHLKRMVKFQQPPNQEEEQMTWSWRNLLNSIFGQENKKKCENGKSPDSFNIYDRRPNFRNNYGWI TAIDESDYQPLRHSGIGVCLVNLTAGSMMAPRTFEPISNRVWNCFEWKQQNTDCVSKWNTSDECKSKSRRCFLGPKILPLLSNCSKVRFSRVLRIHNFSS PEQATALDWCKLNSSNHENP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28490			RmlC-like cupins superfamily p...		Potri.001G259208 [exp]	0	1
AT5G05800			unknown protein		Potri.001G391600 [exp]	3.31	0.9916
AT1G02050		LAP6	LESS ADHESIVE POLLEN 6, Chalco...		Potri.014G056300 [exp]	4.00	0.9892
					Potri.013G071200 [exp]	5.19	0.9954
AT3G11290			unknown protein		Potri.001G256500 [exp]	6.92	0.9964
AT5G05800			unknown protein		Potri.007G118701 [exp]	9.79	0.9913
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	10.81	0.9908
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	10.95	0.9717
AT5G05800			unknown protein		Potri.015G012100 [exp]	15.68	0.9703
					Potri.006G160950 [exp]	17.94	0.9824
					Potri.013G011550 [exp]	18.33	0.9639

Compare expression of checked genes

Potri.001G259208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.