Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) AT2G30350 58 / 4e-10 Excinuclease ABC, C subunit, N-terminal (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259216 [exp] 273 / 9e-95 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260600 [exp] 256 / 1e-87 AT5G43210 165 / 7e-52 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260300 [exp] 183 / 9e-60 AT5G43210 132 / 1e-39 Excinuclease ABC, C subunit, N-terminal (.1) Potri.019G127600 [exp] 53 / 2e-08 AT2G30350 269 / 5e-85 Excinuclease ABC, C subunit, N-terminal (.1.2) Potri.013G155900 [exp] 53 / 2e-08 AT2G30350 268 / 4e-85 Excinuclease ABC, C subunit, N-terminal (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016370 [exp] 122 / 9e-35 AT5G43210 107 / 8e-29 Excinuclease ABC, C subunit, N-terminal (.1) Lus10042228 [exp] 53 / 3e-08 AT2G30350 257 / 9e-83 Excinuclease ABC, C subunit, N-terminal (.1.2) Lus10024187 [exp] 52 / 3e-08 AT2G30350 268 / 1e-86 Excinuclease ABC, C subunit, N-terminal (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0418 [poplar] [flax] GIY-YIG PF01541 [poplar] [flax] GIY-YIG GIY-YIG catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.001G259900.1 pacid=42791179 polypeptide=Potri.001G259900.1.p locus=Potri.001G259900 ID=Potri.001G259900.1.v4.1 annot-version=v4.1 ATGACGAGGTTGCTGTCTCAGACGTTCCGGTCTGTAAAACTTAAAGCATCCTCATCAAAACCACCACCACCACAACAACAACAACCATCCTCATCCTCAT CATTGCCCCGATCAAGAAAAACACGAGCAAAATCGAGCTCAAATTCGAAATCGAGATCATGGTCTGTGTATCTTATTCTCTCTACCAACCACCCGATCAA GACTTACGTTGGTGTCACCACCAATTTCTCTCGCCGCTTGAAACAACATAATGGCGAGCTTAAAGGAGGTGCAAAAGCATCCCGTGCAGGAAGGCCGTGG ATTTGTGCATGCATAATTCGCGGTTTTAATGACCGAAGTGAAGCTTGCAAGTTTGAATCAAAATGGAAAAGCTTTTCAAGGAAATTTCCTCGAAAAAGGA TAGATGATGACCAGATGAAGCAGAGCAGGAAGGACTCGCACCGACTCCTGCAACATAGGAAGACTGCCCTCGATAGGGTTAAAGGTTCATTTGATCTTAG TCACTTAGAAATTGACTGGAAATTGAATACTTTCTGA
AA sequence Show only first row Show all	>Potri.001G259900.1 pacid=42791179 polypeptide=Potri.001G259900.1.p locus=Potri.001G259900 ID=Potri.001G259900.1.v4.1 annot-version=v4.1 MTRLLSQTFRSVKLKASSSKPPPPQQQQPSSSSSLPRSRKTRAKSSSNSKSRSWSVYLILSTNHPIKTYVGVTTNFSRRLKQHNGELKGGAKASRAGRPW ICACIIRGFNDRSEACKFESKWKSFSRKFPRKRIDDDQMKQSRKDSHRLLQHRKTALDRVKGSFDLSHLEIDWKLNTF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G259900 [exp]	0	1
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G259216 [exp]	1.00	0.8493
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260300 [exp]	7.48	0.7481
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G144960 [exp]	22.13	0.5654
AT2G24360			Protein kinase superfamily pro...		Potri.018G001800 [exp]	22.84	0.6948
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	34.91	0.6023
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.010G228500 [exp]	49.56	0.6205
AT1G12020			unknown protein		Potri.004G001800 [exp]	52.01	0.5690
AT3G05990			Leucine-rich repeat (LRR) fami...		Potri.008G150200 [exp]	65.51	0.5895
AT3G22270			Topoisomerase II-associated pr...		Potri.016G020100 [exp]	66.06	0.6170
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	75.57	0.5986

Compare expression of checked genes

Potri.001G259900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.