Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43210 165 / 7e-52 Excinuclease ABC, C subunit, N-terminal (.1) AT2G30350 53 / 3e-08 Excinuclease ABC, C subunit, N-terminal (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G259216 [exp] 234 / 8e-79 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G259900 [exp] 234 / 8e-79 AT5G43210 168 / 1e-53 Excinuclease ABC, C subunit, N-terminal (.1) Potri.001G260300 [exp] 159 / 1e-49 AT5G43210 132 / 1e-39 Excinuclease ABC, C subunit, N-terminal (.1) Potri.019G127600 [exp] 52 / 9e-08 AT2G30350 269 / 5e-85 Excinuclease ABC, C subunit, N-terminal (.1.2) Potri.013G155900 [exp] 52 / 9e-08 AT2G30350 268 / 4e-85 Excinuclease ABC, C subunit, N-terminal (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016370 [exp] 118 / 1e-32 AT5G43210 107 / 8e-29 Excinuclease ABC, C subunit, N-terminal (.1) Lus10042228 [exp] 53 / 4e-08 AT2G30350 257 / 9e-83 Excinuclease ABC, C subunit, N-terminal (.1.2) Lus10024187 [exp] 51 / 2e-07 AT2G30350 268 / 1e-86 Excinuclease ABC, C subunit, N-terminal (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0418 [poplar] [flax] GIY-YIG PF01541 [poplar] [flax] GIY-YIG GIY-YIG catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.001G260600.2 pacid=42790289 polypeptide=Potri.001G260600.2.p locus=Potri.001G260600 ID=Potri.001G260600.2.v4.1 annot-version=v4.1 ATGATCCAGAACGGTTGGTCCGTTGGTCAACCAAGATTACAGTGCAATAAACAAGATTACATGACCGAGTACGTTTCCGTGACAAAACGATTGGTCAGTT GGTCAACCAAATCCATCTCATCGGACCAGATGACGAGGTTGCTGTCTAAGACGTTCCGGTCTGTAAAACTTAAAGCATCCTCATCAAAACCACCACCACC ACAACAACAACCATCCCCATCATCATCATTGCCCCGATCAAGAAAAACACGAGCAAAATCGAGCTCAAATTCGAAATCGAGATCATGGTCTGTGTATCTT ATTCTCTCTACCAACCGCCCTATCAAGACTTACGTTGGTGTCACCACCAATTTCTCTCGCCGCTTGAAACAACATAATGGCGAGCTTAAAGGAGGTGCAA AAGCATCCCGTGCAGGAAGGCCGTGGATTTGTGCATGCATAATTCGCGGTTTTAATGACCGAAGTGAAGCTTGCAAGTTTGAATCAAAATGGAAAATCTT TTCAAGGAAATTGCCTCGAAAAAGGATAGATGATGACCAGATGAAGCAGAGCAGCAAGGACTCGCACCGACTCCTGCAACATAGGAAGACTGCCCTCGAT AGGGTTAAAGGTTCATTTGATCTTAGTCACTTAGAAATTGACTGGAAATTGAATACTTTCTGA
AA sequence Show only first row Show all	>Potri.001G260600.2 pacid=42790289 polypeptide=Potri.001G260600.2.p locus=Potri.001G260600 ID=Potri.001G260600.2.v4.1 annot-version=v4.1 MIQNGWSVGQPRLQCNKQDYMTEYVSVTKRLVSWSTKSISSDQMTRLLSKTFRSVKLKASSSKPPPPQQQPSPSSSLPRSRKTRAKSSSNSKSRSWSVYL ILSTNRPIKTYVGVTTNFSRRLKQHNGELKGGAKASRAGRPWICACIIRGFNDRSEACKFESKWKIFSRKLPRKRIDDDQMKQSSKDSHRLLQHRKTALD RVKGSFDLSHLEIDWKLNTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G43210			Excinuclease ABC, C subunit, N...		Potri.001G260600 [exp]	0	1
AT1G07310			Calcium-dependent lipid-bindin...		Potri.001G249300 [exp]	1.73	0.9130
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	2.44	0.9222
AT2G19270			unknown protein		Potri.006G075000 [exp]	2.64	0.9267
AT5G53330			Ubiquitin-associated/translati...		Potri.015G023600 [exp]	4.00	0.9020
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Potri.012G058200 [exp]	4.69	0.8819	Pt-DR1.2
AT3G50910			unknown protein		Potri.007G022100 [exp]	5.29	0.8758
					Potri.001G077600 [exp]	5.29	0.8948
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Potri.001G370366 [exp]	5.83	0.8907
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	7.07	0.9105
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.002G090200 [exp]	8.06	0.8953	SHMT4

Compare expression of checked genes

Potri.001G260600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.