Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51990 420 / 3e-146 Protein kinase superfamily protein (.1) AT1G28390 292 / 8e-95 Protein kinase superfamily protein (.1.2) AT5G23170 228 / 2e-71 Protein kinase superfamily protein (.1) AT3G59420 239 / 9e-71 ACR4 crinkly4 (.1) AT3G58690 203 / 3e-61 Protein kinase superfamily protein (.1) AT5G66790 196 / 1e-56 Protein kinase superfamily protein (.1) AT4G32000 191 / 2e-56 Protein kinase superfamily protein (.1.2) AT5G38560 196 / 3e-56 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G09780 196 / 1e-55 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT5G47850 195 / 1e-55 CCR4 CRINKLY4 related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055200 [exp] 734 / 0 AT3G51990 409 / 7e-141 Protein kinase superfamily protein (.1) Potri.005G158600 [exp] 354 / 2e-118 AT1G28390 397 / 3e-134 Protein kinase superfamily protein (.1.2) Potri.004G221800 [exp] 259 / 2e-83 AT5G23170 273 / 1e-89 Protein kinase superfamily protein (.1) Potri.003G010300 [exp] 259 / 3e-83 AT5G23170 270 / 3e-88 Protein kinase superfamily protein (.1) Potri.017G029900 [exp] 243 / 6e-72 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.007G128400 [exp] 240 / 4e-71 AT3G59420 1264 / 0.0 crinkly4 (.1) Potri.003G179500 [exp] 200 / 7e-60 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 199 / 3e-59 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.014G143100 [exp] 196 / 3e-58 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016371 [exp] 594 / 0 AT3G51990 402 / 3e-138 Protein kinase superfamily protein (.1) Lus10039770 [exp] 315 / 3e-103 AT1G28390 379 / 2e-127 Protein kinase superfamily protein (.1.2) Lus10019753 [exp] 275 / 9e-91 AT3G51990 174 / 1e-52 Protein kinase superfamily protein (.1) Lus10000764 [exp] 232 / 3e-68 AT3G59420 1255 / 0.0 crinkly4 (.1) Lus10015956 [exp] 230 / 2e-67 AT3G59420 1258 / 0.0 crinkly4 (.1) Lus10034082 [exp] 204 / 7e-59 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10003066 [exp] 202 / 4e-58 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10023645 [exp] 202 / 4e-58 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 201 / 6e-58 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10040467 [exp] 197 / 5e-57 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G260800.1 pacid=42792749 polypeptide=Potri.001G260800.1.p locus=Potri.001G260800 ID=Potri.001G260800.1.v4.1 annot-version=v4.1 ATGGGATACCTTTCTTGCAAGGCAGACTCAGCCATTGCCATAATCTCTACTACACCATCATCTCAAGCATCATCATCTCCTTCTACTTCTAGAACCAAAC AAGAAAAACCCATCAAGATCCGACAGTTTAACTACAGTGATATTGAAGCTGCCACCGATGGTTTCTCTGACCAGAAACTCCTAGGCAAAGGCAGCCATGG CTGTGTCTACAAGGCTGTTTTACGTGGCCGTCATGTTGCTGTCAAGAAACCCTCAAAGGATCTTGAAATTGGCCAAGAAGTAGATAACGAGATCGAGATC TTGTCCAAAATTCACAGCCCAAGATTTGTAAACTTATTAGGCTTTGCTAATGATACTAAGGATAGGTTGCTTGTTGTTGAGTTTATGAGTAATGGTACTC TTTATGATACTCTTCACTCAAATTCTAGACCACCCAATTGGGGTAGAAGAATTAGAATGGCTTTGCAAATAGCTAAGGCTGTTGATACATTACACTCACA AAACCCACCGGTAATTCATAGAGATATTAAGTCTGCAAATGTTTTGATTGACAGGAATTTCAATGCGAGATTGGGTGATTTTGGTTTAGCACTTAGGTGC GGTGTTGATGATGATTATAGACTAAAGTCAACCCCACCTGCTGGTACTATTGGCTATCTTGATCCATGTTATGTTACACCAGATAATTTGAGTACTAAAA CTGATGTGTTTAGTTTTGGGATTTTTCTGTTGGAGATTATTAGCGGGAGGAAGGCTATTGATGTGGGGCATTCTCCTTCTTCTATTGTCGATTGGGCAAT TCCACTCATTAAAAAGGGGAAACTTGGTGCTATTTATGATCCAAGAACTGTCCCGCTTAAGGATCCTATGATTAGGAAGCAGTTGGCTTTGATTGCTTCC AAATGTGTGAGGTCTTGTCGGGAGCGGAGACCTTCCATGAAGGAGGTGGTTGATTGGTTAGCTGCATTGAGTAAATTGGTTCCGCTTCATTCATGGAATG GGTTTAACAATCCATGCATGATGGTGGAGACAGTGGGGCGTCCAGCTGAACTAAGAAATACACAGTTTGGTTCCAGACCACAGGATGATGGAGAAGAGAT TCTGGAAGGAATATATGGTAAAATGGGAAGGAAATCAGTGATGGATACACGGAGAGTGTATTCAGATTTGGGGTTTCGAAGCAATTTGATGGAACTCATG GCCTGGACAGATGCAGAGACTGATGGGTTGAATCTAGTTTGA
AA sequence Show only first row Show all	>Potri.001G260800.1 pacid=42792749 polypeptide=Potri.001G260800.1.p locus=Potri.001G260800 ID=Potri.001G260800.1.v4.1 annot-version=v4.1 MGYLSCKADSAIAIISTTPSSQASSSPSTSRTKQEKPIKIRQFNYSDIEAATDGFSDQKLLGKGSHGCVYKAVLRGRHVAVKKPSKDLEIGQEVDNEIEI LSKIHSPRFVNLLGFANDTKDRLLVVEFMSNGTLYDTLHSNSRPPNWGRRIRMALQIAKAVDTLHSQNPPVIHRDIKSANVLIDRNFNARLGDFGLALRC GVDDDYRLKSTPPAGTIGYLDPCYVTPDNLSTKTDVFSFGIFLLEIISGRKAIDVGHSPSSIVDWAIPLIKKGKLGAIYDPRTVPLKDPMIRKQLALIAS KCVRSCRERRPSMKEVVDWLAALSKLVPLHSWNGFNNPCMMVETVGRPAELRNTQFGSRPQDDGEEILEGIYGKMGRKSVMDTRRVYSDLGFRSNLMELM AWTDAETDGLNLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51990			Protein kinase superfamily pro...		Potri.001G260800 [exp]	0	1
AT3G29170			Eukaryotic protein of unknown ...		Potri.006G053300 [exp]	4.24	0.6457
AT1G22040			Galactose oxidase/kelch repeat...		Potri.005G170000 [exp]	5.47	0.6381
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.016G074100 [exp]	8.00	0.6506
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019700 [exp]	8.24	0.6419
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.019G050000 [exp]	9.16	0.6296
AT4G33180			alpha/beta-Hydrolases superfam...		Potri.006G219400 [exp]	13.56	0.6739
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	21.97	0.5815
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G037500 [exp]	29.93	0.6252
AT1G80630			RNI-like superfamily protein (...		Potri.003G179100 [exp]	54.86	0.5937
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	61.08	0.5994	SQS1.2

Compare expression of checked genes

Potri.001G260800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.