Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63460 1348 / 0 EMB2221 transducin family protein / WD-40 repeat family protein (.1.2.3) AT1G18830 595 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 68 / 2e-11 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 66 / 7e-11 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 66 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT2G16780 63 / 7e-10 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G67320 56 / 2e-07 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT2G19540 54 / 7e-07 Transducin family protein / WD-40 repeat family protein (.1) AT5G13480 52 / 2e-06 FY Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 50 / 6e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055400 [exp] 1967 / 0 AT3G63460 1351 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Potri.004G175300 [exp] 69 / 7e-12 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 67 / 4e-11 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 66 / 8e-11 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 66 / 9e-11 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 54 / 6e-07 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G041600 [exp] 52 / 1e-06 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 52 / 1e-06 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G399600 [exp] 52 / 3e-06 AT3G15354 1003 / 0.0 SPA1-related 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039578 [exp] 1584 / 0 AT3G63460 1380 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016373 [exp] 1444 / 0 AT3G63460 1299 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019752 [exp] 1299 / 0 AT3G63460 1147 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005323 [exp] 1011 / 0 AT3G63460 885 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005322 [exp] 565 / 0 AT3G63460 473 / 2e-156 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10016374 [exp] 179 / 1e-52 AT3G63460 181 / 4e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10019751 [exp] 177 / 6e-52 AT3G63460 181 / 2e-54 transducin family protein / WD-40 repeat family protein (.1.2.3) Lus10005074 [exp] 73 / 4e-13 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 72 / 8e-13 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033459 [exp] 65 / 2e-10 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12931 [poplar] [flax] Sec16_C Sec23-binding domain of Sec16
Representative CDS sequence Show only first row Show all	>Potri.001G260900.1 pacid=42789820 polypeptide=Potri.001G260900.1.p locus=Potri.001G260900 ID=Potri.001G260900.1.v4.1 annot-version=v4.1 ATGGCGGCCATTAAGTCGGTGAATAGATCGGCGTCGGTGGCGTTAGCCCCGGACTCGCCTTACATGGCAGCGGGGACGATGGCGGGGGCGGTTGATCTGT CATTTAGCTCGTCTGCGAATCTTGAGATCTTTAAGCTTGATTTCCAATCGGAAGATCATGATCTCCCTGTTGTTGGTGAGTGTCAAAGTTCTGAGAGATT TAATCGTCTCGCATGGGGCAGGAATGGATCCGGCTCTAATACATATGGTCTTGGACTTATTGCTGGTGGCCTTGTTGATGGCAATATCGACATTTTGAAT CCCTTGTCCCTGATCCGTTCTGAGGCAAGTGAAAGTGCTCTTGTTGGTCATCTATCACGTCACAAAGGGCCTGTTCGTGGCCTTGAATTTAATTCCATCA CCCCTAACTTACTTGCATCTGGCGCTGATGATGGTGAAATCTGCATTTGGGATTTGGCTGCACCTGCAGAACCTTCTCATTTTCCACCTCTCAAGGGTAC TGGTTCTGCCTCTCAAGGAGAGATTTCGTATGTTTCCTGGAATTGCAGAGTTCAACATATATTAGCATCCACTTCTTCCAATGGAATAACAGTGGTTTGG GACCTAAAGAAGCAGAAACCAGCAATTTCTTTTGGAGATTCAATTAGAAGGCGGTGCTCTGTTTTGCAGTGGCATCCCGATGTTGCCACTCAGCTTGTTG TTGCGTCGGATGAAGATGGGTCTCCTTCTCTTCGGCTTTGGGACATGCGAAACATAATTGAACCTGTGAAGGAGTATGTGGGACACACTAAAGGTGTAAT AGGAATGTCATGGTGTCCCAATGACAGCTCATATTTGCTTACCTGCGCTAAAGATAATCGAACAATCTGCTGGAATACAGTAACTGCAGAGATTGTCTGT GAATTGCCAGCTGGCACCAACTGGAACTTCGATGTTCATTGGTATCCCAGGATGCCTGGGGTTATATCAGCATCATCTTTTGATGGAAAAGTTGGCATTT ACAACATTGAGGGTTGCAGTCGATATACTGCTGGGGACAACGACTTTGGAAGAGCAAAACTAAGAGCTCCAAAATGGTGTGAGTGTCCGGTTGGGGCTTC TTTTGGCTTTGGAGGAAAGCTTGTATCATTTCGCCCTAAGTTACATGCTGCTGGTGCTTCCGAGGTTTTTTTGCATAACTTAGTTACCGAAGACAGTTTG GTGAGTCGATCATCTGAATTTGAAAGTGCCATACAAAATGGGGAGAAGTCTTTGCTAAAGGCTTTATGTGATAAAAAATCTCAAGAGTCTGAATCAGAGG ATGATCGAGAAACTTGGGGTTTCTTAAAGGTGATGTTTGAAGAAGATGGAACAGCAAGGACTAGGATGCTTGCCCACCTTGGTTTTAGTGTACCCATTGA AGAAAAAGATGCTGTACAGGAGAATGGTCTCAACCAGGAAATAAATGCCGTTCGACTCGATGATACACCTACTGACAAAGTGGGATATGAGAATAATAAA GAGGCCACCATCTTCTCTGCTGATGATGGGGAAGACTTTTTTAACAACCTTCCAAGTCCTAAAGCTGATGCTTCTTTGGCGCCGTCTGGTGATAATCTTG ATCTTGGGAATTCTGCTCCTATTGCGGAAGAAATATCACAAGAACCAGAGACATTGGAGGAGAGTGCTGACCCATCATTTGATGATAGTATACAATGTGC TTTGGTTGTGGGAGACTACAAAGGGGCTGTTGCACAGTGCATATCAGCAAATAAAATTGCTGATGCTTTAGTTATTGCTCATGCTGGTGGCACTTCATTA TGGGAGAATACACGTGATCAATATCTTAAATTGAGTCCTTCACCTTACTTGAAGATTGTTTCTGCAATGGTGAACAATGATCTTTTGACCCTTGTAAACA CCAGGCCTCTCAAATACTGGAAAGAAACTCTTGCACTCCTTTGTACATTCGCACCAAGTGAGGAATGGAGTATGCTATGCAATTCACTTGCTTCAAAATT AATAGCTGCTGGTAATACTTTGGCGGCAACTCTTTGTTATATATGTGCTGGCAATATTGACAAAACAGTTGAAATTTGGTCAAGGAGTCTGTCCACTGAG AGTGAAGGGAAATCGTACATTGATCTTCTTCAGGATTTGATGGAGAAGACCATCGTCCTTGCTCTGGCAAGTGGTCAAAAGCAATTTAGTGCCTCTTTGT GCAAGCTTGTTGAGAAGTATGCTGAAATTTTAGCCAGTCAGGGCCTCTTAACAACAGCACTAGAGTACTTGAAACTTTTGGGTTCTGATGATTTGTCTCC TGAGCTTACAATCATAAGAGACCGTATTGCTCTCTCCATGGAACCTGAGAAAGAAGCTAAGACTCCAGCTTTTGAGAACACCCAACAGCAAGGTGGATCA TTTTATGGTGCCCAACATCCTGGTTTTGGTGTGGCTGATGCCCCTCATACTTATTATCAGGGAGCAGTTACTCAACAAATGAACCAGAGTGTTCCTGGGA GTCTATACAGTGAAAATAATCAGCAACCTATTGACTCGTCGTACGGAAGAGGATTTGGTGCTCCTTCTCCCTATCAGCCTTCACCACCGCCCCCGGCATA TCAGCCTGCACCACTGCCCCAAATGTTTGTTCCAACTCCTACACCACAGGCACCTAAGACAAATTTTGCTCCACCTCCACCTCATGCTGCTGCCTCTCAA CAGCCTACGAGGCCTTTTGTCCCTGCAAATGTTCCCATGCTAAGAAATGCAGAACAGTATCAGCAACCCACATTGGGCTCTCAGTTATATCCTGGGACTG CCAATCCTGCCTATAATCCTGTACAACCCCCAACTGGTTCACAAGGACCTATCACAGCTCAGACGGGTGCAATTCCTGGCCACAGAATGCCACAAGTTGT TGCTCCTGGCCCAACACCAATGGGATTTAGGCCTGTACATTCAGGGGTTGTTCAAAGACCTGGGATTGGTTCAATGCAACCGCCAAGTCCTACTCAGCCT GCATCAATGCAACCAGCTGTGGTTCCTGCTGCTCCACCGCCTACCGTGCAAACAGTCGACACCTCAAATGTTCCTGCTCACCATAGACCAGTCATTACAA CATTGACAAGACTATTTAAAGAGACATCAGAAGCTTTGGGAGGTGCCCGTGCAAATCCAGCCAGGAAGCGTGAAATTGAAGATAATTCAAGGAAAATAGG TGCCTTGTTTGCTAAACTCAACAGTGGGGATATATCTGAAAATGCTTCTGATAAGCTTTTTCAGCTATGCCAGGCTTTGGACATGAATGATTTTAGCACA GCTCTGCAAATCCAGGTACTTCTTACCACAAGTGAGTGGGATGAATGTAACTTCTGGCTAGCAACGCTCAAAAGAATGATCAAGACAAGGCAGGGCGCTG GTGTGAGATCAAGTTAA
AA sequence Show only first row Show all	>Potri.001G260900.1 pacid=42789820 polypeptide=Potri.001G260900.1.p locus=Potri.001G260900 ID=Potri.001G260900.1.v4.1 annot-version=v4.1 MAAIKSVNRSASVALAPDSPYMAAGTMAGAVDLSFSSSANLEIFKLDFQSEDHDLPVVGECQSSERFNRLAWGRNGSGSNTYGLGLIAGGLVDGNIDILN PLSLIRSEASESALVGHLSRHKGPVRGLEFNSITPNLLASGADDGEICIWDLAAPAEPSHFPPLKGTGSASQGEISYVSWNCRVQHILASTSSNGITVVW DLKKQKPAISFGDSIRRRCSVLQWHPDVATQLVVASDEDGSPSLRLWDMRNIIEPVKEYVGHTKGVIGMSWCPNDSSYLLTCAKDNRTICWNTVTAEIVC ELPAGTNWNFDVHWYPRMPGVISASSFDGKVGIYNIEGCSRYTAGDNDFGRAKLRAPKWCECPVGASFGFGGKLVSFRPKLHAAGASEVFLHNLVTEDSL VSRSSEFESAIQNGEKSLLKALCDKKSQESESEDDRETWGFLKVMFEEDGTARTRMLAHLGFSVPIEEKDAVQENGLNQEINAVRLDDTPTDKVGYENNK EATIFSADDGEDFFNNLPSPKADASLAPSGDNLDLGNSAPIAEEISQEPETLEESADPSFDDSIQCALVVGDYKGAVAQCISANKIADALVIAHAGGTSL WENTRDQYLKLSPSPYLKIVSAMVNNDLLTLVNTRPLKYWKETLALLCTFAPSEEWSMLCNSLASKLIAAGNTLAATLCYICAGNIDKTVEIWSRSLSTE SEGKSYIDLLQDLMEKTIVLALASGQKQFSASLCKLVEKYAEILASQGLLTTALEYLKLLGSDDLSPELTIIRDRIALSMEPEKEAKTPAFENTQQQGGS FYGAQHPGFGVADAPHTYYQGAVTQQMNQSVPGSLYSENNQQPIDSSYGRGFGAPSPYQPSPPPPAYQPAPLPQMFVPTPTPQAPKTNFAPPPPHAAASQ QPTRPFVPANVPMLRNAEQYQQPTLGSQLYPGTANPAYNPVQPPTGSQGPITAQTGAIPGHRMPQVVAPGPTPMGFRPVHSGVVQRPGIGSMQPPSPTQP ASMQPAVVPAAPPPTVQTVDTSNVPAHHRPVITTLTRLFKETSEALGGARANPARKREIEDNSRKIGALFAKLNSGDISENASDKLFQLCQALDMNDFST ALQIQVLLTTSEWDECNFWLATLKRMIKTRQGAGVRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63460		EMB2221	transducin family protein / WD...		Potri.001G260900 [exp]	0	1
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.013G113700 [exp]	1.73	0.9034
AT3G58640			Mitogen activated protein kina...		Potri.014G142700 [exp]	6.00	0.8627
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	8.12	0.8479
AT1G62020			Coatomer, alpha subunit (.1)		Potri.012G074800 [exp]	11.22	0.8509
AT2G38840			Guanylate-binding family prote...		Potri.002G046000 [exp]	11.95	0.8577
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	12.24	0.8646
AT5G43400			Uncharacterised conserved prot...		Potri.009G091400 [exp]	16.55	0.7788
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Potri.014G075300 [exp]	17.49	0.8123
AT5G08580			Calcium-binding EF hand family...		Potri.005G087600 [exp]	21.90	0.8595
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Potri.017G106800 [exp]	24.16	0.8700

Compare expression of checked genes

Potri.001G260900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.