Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60910 387 / 1e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G17365 215 / 5e-70 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G34360 105 / 4e-27 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G31740 100 / 1e-23 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66680 61 / 1e-10 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055600 [exp] 456 / 2e-164 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G153200 [exp] 213 / 2e-69 AT3G17365 313 / 1e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.004G150200 [exp] 121 / 3e-33 AT4G34360 385 / 1e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 99 / 1e-23 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G062400 [exp] 56 / 6e-09 AT1G66680 414 / 4e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019750 [exp] 402 / 2e-143 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 346 / 5e-121 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016375 [exp] 167 / 1e-52 AT3G60910 164 / 7e-52 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016656 [exp] 108 / 8e-27 AT2G31740 895 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033577 [exp] 61 / 2e-10 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017619 [exp] 59 / 8e-10 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.001G261000.4 pacid=42792054 polypeptide=Potri.001G261000.4.p locus=Potri.001G261000 ID=Potri.001G261000.4.v4.1 annot-version=v4.1 ATGTACAGCGATGTGTCAAGCTGCAATACTTACAACTATGGCGACGCCTTGTATTGGGACGCCCGTTATGTCCAAGAGGCTGAGAGCTTCGATTGGTACC AGCGCTACGCTTCTCTTCGCCCCTTTGTTCGTCGCTATATCCCCACTTCCTCTCGTGTCCTCATGGTTGGCTGTGGCAATGCCCTTATGTCGGAGGACAT GGTTGATGATGGATATGAAAACATAATGAACGTTGATATCTCGTCAGTGGCCATTGACCTAATGAGAAGAAAATACGAGCATATGCCTCAGCTCAATTAC ATGGAAATGGATGTTAGAGATATGAGCTTCTTCCCAGATGAATCTTTTGATGCTGTCATCGACAAGGGGACTCTTGATTCTTTAATGTGTGGCAGTGATG CTCCTATTAGTGCTGCCAGAATGTTGGGGGAAGTAAGCAGGCTTCTTAAACCCGGAGGAATTTATATGTTGATAACCTATGGTGATCCTAAAGTAAGGAT GCCACATTTGACCCGGTCCATTTACAGTTGGAAAATTGTATTGTATGCGATACCTAGACCAGGTTTTAAAAAACCAGCAGGTAGTTCATCAAACTCACAT TTGGAACCAGTTCCCATTACCGAGACGGGCTTACTTCCAGCAGATTTTGTTTTGGACGATCCAGATTCTCACTTTATATATGTGTGTAAAAAGATGGATG AAACAACAGACCTGAGTAATATATCGTCCCATCCATTGATTGCTGATGCTTCATAG
AA sequence Show only first row Show all	>Potri.001G261000.4 pacid=42792054 polypeptide=Potri.001G261000.4.p locus=Potri.001G261000 ID=Potri.001G261000.4.v4.1 annot-version=v4.1 MYSDVSSCNTYNYGDALYWDARYVQEAESFDWYQRYASLRPFVRRYIPTSSRVLMVGCGNALMSEDMVDDGYENIMNVDISSVAIDLMRRKYEHMPQLNY MEMDVRDMSFFPDESFDAVIDKGTLDSLMCGSDAPISAARMLGEVSRLLKPGGIYMLITYGDPKVRMPHLTRSIYSWKIVLYAIPRPGFKKPAGSSSNSH LEPVPITETGLLPADFVLDDPDSHFIYVCKKMDETTDLSNISSHPLIADAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60910			S-adenosyl-L-methionine-depend...		Potri.001G261000 [exp]	0	1
AT4G19185			nodulin MtN21 /EamA-like trans...		Potri.004G237100 [exp]	6.85	0.8563	N21L2
AT5G17630			Nucleotide/sugar transporter f...		Potri.013G071900 [exp]	7.07	0.8242
AT1G69430			unknown protein		Potri.006G159000 [exp]	20.39	0.8314
AT3G59500			Integral membrane HRF1 family ...		Potri.014G175900 [exp]	21.63	0.8207
AT1G69430			unknown protein		Potri.006G155900 [exp]	30.78	0.8291
AT1G50710			unknown protein		Potri.011G090800 [exp]	42.66	0.7757
AT2G29050		ATRBL1	RHOMBOID-like 1 (.1.2)		Potri.001G241300 [exp]	45.59	0.8213
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Potri.015G077900 [exp]	45.82	0.8287
AT2G40435			unknown protein		Potri.006G106900 [exp]	52.52	0.8074
AT3G24160		PMP	putative type 1 membrane prote...		Potri.001G049800 [exp]	58.39	0.7933	Pt-PMP.1

Compare expression of checked genes

Potri.001G261000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.