Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	A.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63470 611 / 0 SCPL40 serine carboxypeptidase-like 40 (.1) AT4G30610 452 / 2e-156 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT3G52020 443 / 3e-152 SCPL39 serine carboxypeptidase-like 39 (.1) AT2G24000 433 / 1e-148 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT5G08260 433 / 2e-148 SCPL35 serine carboxypeptidase-like 35 (.1) AT2G35780 432 / 2e-148 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 426 / 3e-146 SCPL27 serine carboxypeptidase-like 27 (.1) AT2G24010 423 / 3e-145 SCPL23 serine carboxypeptidase-like 23 (.1) AT5G23210 425 / 6e-145 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT3G02110 424 / 6e-145 SCPL25 serine carboxypeptidase-like 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G055900 [exp] 809 / 0 AT3G63470 570 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.009G056000 [exp] 638 / 0 AT3G63470 557 / 0.0 serine carboxypeptidase-like 40 (.1) Potri.006G183200 [exp] 439 / 4e-151 AT4G30610 739 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.018G105700 [exp] 437 / 2e-150 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.007G072300 [exp] 432 / 3e-148 AT5G08260 632 / 0.0 serine carboxypeptidase-like 35 (.1) Potri.008G041800 [exp] 429 / 4e-147 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.005G091700 [exp] 428 / 2e-146 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Potri.010G220100 [exp] 426 / 5e-146 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.004G120100 [exp] 426 / 6e-146 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016377 [exp] 491 / 1e-170 AT3G63470 501 / 2e-174 serine carboxypeptidase-like 40 (.1) Lus10019747 [exp] 488 / 1e-169 AT3G63470 502 / 4e-175 serine carboxypeptidase-like 40 (.1) Lus10019749 [exp] 473 / 1e-163 AT3G63470 478 / 1e-165 serine carboxypeptidase-like 40 (.1) Lus10019748 [exp] 474 / 6e-163 AT3G63470 471 / 2e-161 serine carboxypeptidase-like 40 (.1) Lus10023505 [exp] 441 / 1e-151 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 434 / 5e-149 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10015382 [exp] 430 / 6e-147 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10005327 [exp] 427 / 6e-146 AT3G63470 449 / 1e-154 serine carboxypeptidase-like 40 (.1) Lus10010190 [exp] 422 / 4e-144 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10019954 [exp] 422 / 9e-144 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.001G261100.1 pacid=42787825 polypeptide=Potri.001G261100.1.p locus=Potri.001G261100 ID=Potri.001G261100.1.v4.1 annot-version=v4.1 ATGGAAAGTAACCCATGTTTGCCTCTCATTTTCTTTCTTATTATTTCTTGTTCTGTTGCCCAAATCGAAGCTGGCATGAGGCAAAGTGAAGCACTTGGCC ATCTCTACAAGGCCAAGTTGGAGGGAAATTCTAAAGTTGACAGTGCTCTTTTTCAAGCAACCGAACATGTAGATATATCCAAGTTTCATCATCAAGAGGG ATTAAAGGAGAAAGATAGAATAGAGAGCTTGCCTGGACAGCCAAAAGTAGAGTTCTCGCAATATGGTGGTTATGTTACTGTTGATAAATCTGCTGGACGA GCACTCTATTATTACTTTGTTGAGGCTCAACATTCTAAAGAGTCTTCGCCTCTTCTTCTCTGGCTCAATGGAGGCCCTGGTTGTTCATCTCTGGCATACG GTGCAATGCAAGAACTTGGACCATTTCGAGTATATAGTGATGGCAAAAAACTTTATAAAAACAGATACTCATGGAATTATGCTGCAAATGTTTTGTTTCT TGAATCTCCTGCGGGAGTGGGGTTTTCATACTCGAACACAACATCAGATTACGAGAAAAGTGGAGACAAGAGAACAGCTGAAGATAATTATGTGTTCTTA GTGAATTGGCTGGAGAGGTTTTCTGAGTATAAAGATAGAGAATTCTACATATCAGGTGAAAGCTATGCAGGACATTATGTGCCTGAACTTGCTCACACTA TTCTATACCATAACAAGAAGGCTAAGAAGGCCATTATCAATCTCAAAGGAATTCTTATTGGGAATGCAGTAATCAACCCTGAAACTGATAGAATAGGGAT GTATGACTACTTAGGAAGCCATGCTATAATTTCAGATGTGTTGGTTCATAAAGTACGAACACATTGCAATTTCTCATTCAATGCAACACCTCAGTCTGAT GAGTGCAATGAAGCAGTAGATGAAGTAAGAAAGGATACTCATCATATCGATATATACAACATCTATGCTCCATCATGCTTTTATAAGAGTACCACAGCAA AGCCGAAGAAACCTTCTTTGGTGAACTTCGATCCCTGCAGTGATTATTACGTGTATGCTTATCTTAATCGACCTGATGTCCAAGAAGCCATGCATGCCAA TGTAACCAAACTCACTCATGATTGGGAACCTTGTAGTGATGTAATAACAAGTTGGTCAGATAGCCCTTCAACAATTATTCCTCTACTGCAAGAGCTCATG GCAAACGGTCTTCGAGTGTGGATATTTAGCGGTGATACAGATGCGAGGGTGCCGGTTACTTCAACTCAGTATTCTATTGATAAGATGAAACTTCAAGTAA AAACCGAATGGCATCCTTGGTACCTCAAAGGGGAGGTTGGAGGATATACGCAAGTGTACAGAGGAGATTTGACATTTGCCACCGTAAGGGGGGCAGGACA TCAAGTGCCAACCTATCAGCCATTGAGAGCACTTTCCTTAATCAAGCATTTCCTTCATGGCACATCTCTTCCAGATACTACGAGATATTAA
AA sequence Show only first row Show all	>Potri.001G261100.1 pacid=42787825 polypeptide=Potri.001G261100.1.p locus=Potri.001G261100 ID=Potri.001G261100.1.v4.1 annot-version=v4.1 MESNPCLPLIFFLIISCSVAQIEAGMRQSEALGHLYKAKLEGNSKVDSALFQATEHVDISKFHHQEGLKEKDRIESLPGQPKVEFSQYGGYVTVDKSAGR ALYYYFVEAQHSKESSPLLLWLNGGPGCSSLAYGAMQELGPFRVYSDGKKLYKNRYSWNYAANVLFLESPAGVGFSYSNTTSDYEKSGDKRTAEDNYVFL VNWLERFSEYKDREFYISGESYAGHYVPELAHTILYHNKKAKKAIINLKGILIGNAVINPETDRIGMYDYLGSHAIISDVLVHKVRTHCNFSFNATPQSD ECNEAVDEVRKDTHHIDIYNIYAPSCFYKSTTAKPKKPSLVNFDPCSDYYVYAYLNRPDVQEAMHANVTKLTHDWEPCSDVITSWSDSPSTIIPLLQELM ANGLRVWIFSGDTDARVPVTSTQYSIDKMKLQVKTEWHPWYLKGEVGGYTQVYRGDLTFATVRGAGHQVPTYQPLRALSLIKHFLHGTSLPDTTRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63470		SCPL40	serine carboxypeptidase-like 4...		Potri.001G261100 [exp]	0	1	A.2
					Potri.007G135201 [exp]	20.66	0.8053
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	22.18	0.8168
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	24.00	0.8151
AT1G21070			Nucleotide-sugar transporter f...		Potri.005G260300 [exp]	27.74	0.8080
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	46.79	0.8019
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	48.92	0.7958
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.018G119500 [exp]	51.14	0.7995
AT1G28240			Protein of unknown function (D...		Potri.004G044100 [exp]	52.54	0.7997
AT2G31930			unknown protein		Potri.009G024700 [exp]	55.62	0.7982
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.007G104000 [exp]	63.49	0.7806

Compare expression of checked genes

Potri.001G261100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.