Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13760 639 / 0 Plasma-membrane choline transporter family protein (.1) AT3G03700 192 / 1e-54 Plasma-membrane choline transporter family protein (.1) AT3G04440 191 / 2e-54 Plasma-membrane choline transporter family protein (.1) AT5G17830 132 / 5e-33 Plasma-membrane choline transporter family protein (.1) AT1G25500 104 / 1e-23 Plasma-membrane choline transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G056700 [exp] 810 / 0 AT5G13760 639 / 0.0 Plasma-membrane choline transporter family protein (.1) Potri.019G040500 [exp] 228 / 1e-68 AT3G04440 422 / 6e-145 Plasma-membrane choline transporter family protein (.1) Potri.013G066100 [exp] 225 / 7e-68 AT3G03700 436 / 7e-151 Plasma-membrane choline transporter family protein (.1) Potri.009G056301 [exp] 170 / 9e-49 AT5G13760 145 / 9e-40 Plasma-membrane choline transporter family protein (.1) Potri.010G128100 [exp] 125 / 1e-30 AT1G25500 581 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Potri.008G118200 [exp] 124 / 2e-30 AT1G25500 588 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039585 [exp] 729 / 0 AT5G13760 719 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10005331 [exp] 728 / 0 AT5G13760 714 / 0.0 Plasma-membrane choline transporter family protein (.1) Lus10041476 [exp] 128 / 1e-31 AT1G25500 624 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3) Lus10034295 [exp] 128 / 2e-31 AT1G25500 625 / 0.0 Plasma-membrane choline transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04515 [poplar] [flax] Choline_transpo Plasma-membrane choline transporter
Representative CDS sequence Show only first row Show all	>Potri.001G261900.1 pacid=42793472 polypeptide=Potri.001G261900.1.p locus=Potri.001G261900 ID=Potri.001G261900.1.v4.1 annot-version=v4.1 ATGGGGGCTTCAGAACCTGTGGTAGAGAGAGAGGGTGAAAGGAGAGAGGAGGGAGAAGAAGAAGATAAGGGGGAGGAGGAAGGAAATGAGAGGAAAGAAG AGGAGAAAGATGTGGAGAAAGGACAAGTGCTGGGTGTTAAAGAAAAGGTGATAGACAACAGTAACATTGGTGTCAATAATGATCTACCTAACCGGCTGGG AGATTCTCATGTGGCAATGATGCAGAGGTTGAACCCAACAAATCCTTTGAGGATTGTCATCAATGGCTCTTCCAGAATGCCTACTCCTTCTCCTTCTCAG ACTTCTCTGCCTCGGTCTACACCAACCCCACAACCATCGCTAACAACATTGAATTCAAGAAGATACACAAACAGAATATCTCTGTTTCTGTTTGTCCTGC ACATGGTTGTCGCTGTTGGACTGGTATCTTTTCTTATATTCAAGGGAATTCAAGGATTGACAGAAGCTTCGGATAGTGTGAAAAGAAAAGAGAGGAGGAT ATTGAAGTTCTACCTCCCACAAGTTGAAACCGCATCTCTATTAAGCATCACCCTTGCGTTTGTTTGGCAAAAGGCAGTTAGACAATGGCCTAAATTCATG GTTCAGTTCATATTATGGAGCTCTTTTTTACTGTCGTTATCAGCTGGAATTCTTTTAATTTGCTTCCAAAGGGCTACTACTGATGGTGTTGGAGTTTGTC TTATTGCCTTTTCAATTGGCAATGGCTTGTATGCCTGTTGGGTTACTCAAAGAATTGGGTTTTGCAGCAAGATTCTGATCAAATCACTGGAACCGGTTCC GAAATTCCGTGATTTGAACCAACCCACTTATTGTATGCTTGGAGTTGGATTCTTGTGGATGTCTCTTTGGATTTTAGCCGTGATTGGAGCCATGAATTTC TACTTTACTCCTTTGATCATTATTGCACTGGTGTTGAGCTTGGCTTGGACTGCAGAAGTTATGAGGAATATAGTTAATTTGACAGTTAGTAGGGTAATTG CTCTGTATTATCTTCGAGGAATGCAATCCAGCAGTCAATTTTGTTTCCAAAGAGCTTTAACTCGGAACCTTGGAAGTGCTTGTCTGGGGTCTCTATTTGT GCCTGCTATTGAAGCACTGAGAATTGTTGCTCGGGGTTTGAATTTGCTAGAGGGGGAGGATGAGTTCATGTTTTCTTGTGCTCATTGCTGTCTTGGAATT ATGCAGTCTATCTTCAGATATGGAAATGGCTGGGCCTTTGTACAGATAGCTGCATATGGAAAAGGGTTTGTGCAGGCATCACAAGACACCTGGCAACTCT TCGAAAGACGCGGAATGGAATCCATTGTTGACTTGGACATAACCAGCTCGATTTGCTTCCTCACAGGTGTTTGCAGTGGATCTATTTGCGTAATTGTTGT GGCTGCCTGGACTGCCAAAGTGCATCAAACCTTCACTGCCACTCTCTCGCTCCTGTCCTTCTTCATTGGATACCTCATGACCAGGATTGCCATGGCATTG CCGCATGCCTGTGTGAGCTGTTACTATGTTTGCTACGCAGAAAATCCTGATCCCAGGTTGTTTGATCGAATCATCAAAGATCAACAGGACATGATGAACT CGGATCGCGGAGTGGTCATGCCCATACCCCGCAGATTTTCAACTAACTCATGA
AA sequence Show only first row Show all	>Potri.001G261900.1 pacid=42793472 polypeptide=Potri.001G261900.1.p locus=Potri.001G261900 ID=Potri.001G261900.1.v4.1 annot-version=v4.1 MGASEPVVEREGERREEGEEEDKGEEEGNERKEEEKDVEKGQVLGVKEKVIDNSNIGVNNDLPNRLGDSHVAMMQRLNPTNPLRIVINGSSRMPTPSPSQ TSLPRSTPTPQPSLTTLNSRRYTNRISLFLFVLHMVVAVGLVSFLIFKGIQGLTEASDSVKRKERRILKFYLPQVETASLLSITLAFVWQKAVRQWPKFM VQFILWSSFLLSLSAGILLICFQRATTDGVGVCLIAFSIGNGLYACWVTQRIGFCSKILIKSLEPVPKFRDLNQPTYCMLGVGFLWMSLWILAVIGAMNF YFTPLIIIALVLSLAWTAEVMRNIVNLTVSRVIALYYLRGMQSSSQFCFQRALTRNLGSACLGSLFVPAIEALRIVARGLNLLEGEDEFMFSCAHCCLGI MQSIFRYGNGWAFVQIAAYGKGFVQASQDTWQLFERRGMESIVDLDITSSICFLTGVCSGSICVIVVAAWTAKVHQTFTATLSLLSFFIGYLMTRIAMAL PHACVSCYYVCYAENPDPRLFDRIIKDQQDMMNSDRGVVMPIPRRFSTNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13760			Plasma-membrane choline transp...		Potri.001G261900 [exp]	0	1
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.014G177700 [exp]	1.73	0.8807
AT3G54400			Eukaryotic aspartyl protease f...		Potri.001G028200 [exp]	4.58	0.8572
AT1G75060			unknown protein		Potri.002G133500 [exp]	6.32	0.8167
AT1G78172			unknown protein		Potri.002G096200 [exp]	8.66	0.8347
AT4G23490			Protein of unknown function (D...		Potri.001G100700 [exp]	9.64	0.7680
AT3G13000			Protein of unknown function, D...		Potri.006G216800 [exp]	9.79	0.8027
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	10.19	0.8514
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.001G197900 [exp]	12.48	0.7760
AT5G53880			unknown protein		Potri.001G398700 [exp]	12.48	0.8256
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.009G058600 [exp]	13.49	0.8002	Pt-SMT.2

Compare expression of checked genes

Potri.001G261900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.