Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RPS8.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59240 305 / 1e-106 Ribosomal protein S8e family protein (.1) AT5G20290 285 / 1e-98 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360500 [exp] 340 / 3e-120 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 340 / 6e-120 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1) Potri.017G110000 [exp] 340 / 6e-120 AT5G59240 317 / 2e-111 Ribosomal protein S8e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025887 [exp] 293 / 2e-101 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10002338 [exp] 305 / 1e-98 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 301 / 8e-98 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10016587 [exp] 263 / 1e-88 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003761 [exp] 228 / 4e-76 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [poplar] [flax] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Potri.001G262100.1 pacid=42790230 polypeptide=Potri.001G262100.1.p locus=Potri.001G262100 ID=Potri.001G262100.1.v4.1 annot-version=v4.1 ATGGGGATTTCTCGTGATTCTATGCACAAGAGGAGGGCGACTGGAGGAAAGAAGAAAGCCTGGAGAAAGAAGAGAAAGTATGAGCTCGGAAGGCAACCTG CAAGCACTAAGCTCTCTAGCAACAAGACAGTTAGGAGGATTCGGGTTCGAGGAGGAAATGTGAAGTGGCGTGCTCTGAGACTTGATACTGGAAACTACTC ATGGGGGAGTGAGGCTGTGACCCGAAAGACCAGGATTCTTGATGTGGTGTACAATGCATCTAACAATGAGTTGGTCCGTACTCAGACTTTGGTGAAGAGT GCCATTGTTCAGGTTGATGCTGCACCTTTCAAGCAGTGGTATCTCCAGCACTATGGTGTGGACATTGGTCGCAAGAAGAAAACCGCACCAGCTGCCAAGA AGGAAGGAGAGGATGGTGAGGCTGCTGTTGAGGAGGAGAAGAAGAGCAAGCATGTCCAGAGAAAGCTGGAGAAGAGACAACAGACTCGCAAGCTTGACCC GCATATCGAAGAACAATTTGGTAGTGGTCGTTTGCTAGCTTCTATTTCATCACGTCCTGGTCAGTGTGGGCGAGCTGATGGATACATCCTGGAGGGCAAA GAATTGGAGTTTTACATGAAGAAGATACAGAGGAAGAAGGGCAAGGGAGCTGGGGCTGCCTAG
AA sequence Show only first row Show all	>Potri.001G262100.1 pacid=42790230 polypeptide=Potri.001G262100.1.p locus=Potri.001G262100 ID=Potri.001G262100.1.v4.1 annot-version=v4.1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPASTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKS AIVQVDAAPFKQWYLQHYGVDIGRKKKTAPAAKKEGEDGEAAVEEEKKSKHVQRKLEKRQQTRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGK ELEFYMKKIQRKKGKGAGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59240			Ribosomal protein S8e family p...		Potri.001G262100 [exp]	0	1	RPS8.3
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.008G050200 [exp]	1.00	0.9727
AT1G74050			Ribosomal protein L6 family pr...		Potri.001G271500 [exp]	2.44	0.9529
AT3G03920			H/ACA ribonucleoprotein comple...		Potri.013G058400 [exp]	7.07	0.9335
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.014G053300 [exp]	7.74	0.9419	RPS11.4
AT4G14320			Zinc-binding ribosomal protein...		Potri.005G092500 [exp]	7.74	0.9574
AT1G74270			Ribosomal protein L35Ae family...		Potri.008G059400 [exp]	8.12	0.9480
AT5G59240			Ribosomal protein S8e family p...		Potri.017G110000 [exp]	8.71	0.9382
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113900 [exp]	8.94	0.9462
AT1G74050			Ribosomal protein L6 family pr...		Potri.009G065800 [exp]	10.95	0.9527
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Potri.006G103700 [exp]	10.95	0.9475

Compare expression of checked genes

Potri.001G262100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.