Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15920 1429 / 0 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) AT5G07660 81 / 2e-15 SMC6A structural maintenance of chromosomes 6A (.1) AT5G61460 73 / 1e-12 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47460 71 / 5e-12 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 64 / 5e-10 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G54670 54 / 7e-07 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 44 / 0.001 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G107700 [exp] 78 / 3e-14 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G125000 [exp] 67 / 5e-11 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 66 / 2e-10 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.005G224900 [exp] 56 / 2e-07 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.009G155200 [exp] 45 / 0.0002 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039590 [exp] 1286 / 0 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029476 [exp] 1281 / 0 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10005338 [exp] 135 / 1e-36 AT5G15920 124 / 8e-34 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10029473 [exp] 96 / 5e-23 AT5G15920 76 / 6e-17 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10027219 [exp] 75 / 3e-13 AT5G61460 1070 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027215 [exp] 61 / 5e-09 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10024895 [exp] 50 / 1e-05 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 49 / 3e-05 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF02463 [poplar] [flax] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G262600.1 pacid=42788855 polypeptide=Potri.001G262600.1.p locus=Potri.001G262600 ID=Potri.001G262600.1.v4.1 annot-version=v4.1 ATGAAACGGCCTTCAACTAGGGAGGAACCTCCCTCAAAACGCGCCAAAACCTCCAGAGGAGAAGATGATTACATGCCTGGAAACATAATTGAGATTGAAC TTCGTAACTTCATGACTTATGATTGTTTGGTTTGCAAACCTGGATCACGCCTGAACCTTGTAATTGGACCAAATGGGTCGGGTAAGAGCTCAATTGTGTG TGCCATTGCACTTGGACTTGGTGGTGAGCCTCAGCTGCTTGGGAGGGCAACGAGTATTGGGGCATATGTGAAGCGCGGGGAGGAGTCTGGGCACATCAAA ATATCCTTGAGAGGAAGTACAAAAGATGAGAAGATTACCATAATCCGCAGAATTGACGCACATAACAAGTCAGAGTGGTTGTTCAATGGAAAAGTGGCAT CTAAGAAAGAGGTCACTGAAATCATGCAACAATTCAACATCCAAGTCAACAATTTGACTCAATTCTTGCCACAAGATAGGGTATGTGAATTTGCAAAGTT AACTCCTGTGCAACTTCTAGAAGAGACTGAAAAGGCTGTCGGTGATCCTCAACTTCCAATCCAACACCGTGCTCTTGTTGACAAAAGTCGTGAACTGAAG ACCATTGAAATGGCTGTTAAGAGGAATGGGGAAACATTGAATCAGCTGAAAGCTCTTAATGCTGAGCTTGAAAAAGACGTGGAGCGTGTCAGACAAAGGG AAGTGCTTCTAAAGAAGGCTGAATCCATGAAAAAGAAATTGCCATGGCTGAAGTATGATGCGATAAAGGCTGACTATTTGAAAGCTAAAGAGGCAGAAAA GGACGTAAAACAGAAGCTGGAGGAAGCTGCAAAAACTTTGAATAACTTGAGAGAACCTATCGAAAAACAGAAGCTTGAAAAACCCCAAATGGATGCTAAA TGTAAAAGATTAAGCAATCTCATAAAGGAAAATGCTAAGCGACGTATGGAGTTACTGGAGAAGGAAAGCAGTTTGGGGGTGCAAATTCGTGGAAAATACA AGGAAATGGGAGACTTGAAGAAGGAAGAAGAATCACGCCAACAAAGAATCATAAAAGCTAAAGAGGATCTTGCAATTGCTGAAGCAGAACATCGAAATTT GCCTGTCTATGAACCTCCAAAAGATGTGCTTGATAAATTACGCTCTCAGATTTCTGATTTAAAAGTCTCTGCAAATCAAAAAAGAATTCAGAAGCAGGAC AAGGAGAAAGTTTTAAATCAAAAGAACATAGCACTGAGGCATTGTGTTGACAGGCTGAAGGATATGGAAAATAAAAACAATAAGCTCTTACAAGCATTAA GAAATTCTGGAGCTGAAAAGATATTTGAGGCTTATCATTGGCTGCGAGAACATTGTCAGGAATTGAATAAGGAAGTCTATGGGCCTGTTTTGCTTGAGGT TAATGTCTCTAATCGGGATCATGCTGACTACTTGGAAGGTCATGTCCCATATTATATCTGGAAGTCTTTCATAACCCAGGATCCTCATGACCGGGACTTT TTGGTAAGAAACCTGAAGTCATTTGATGTGCCGATTTTAAACTACGTGAGGGATAAATATCGTCATAAGGAGCCTTTTTTCATTTCCAATGAGATGCGTG AGCTTGGCATCTATTCACGGCTCGACCAAATTTTTGAAGCTCCTGATGCTGTTAAGGAGGTTTTGATCAGCCAGTTTGGGCTGGAACATTCTTATATTGG GTCAAAGGAAACTGATCAGAAGGCTGCTGAGGTGGCAAAGTTGCGAGTTTTAGATTTTTGGACTCCTGAAAATCACTACCGGTGGTCTGTTTCTAGATAT GGTGGTCATGTATCAGGAAGTGTTGATCCAGTTGATCGTTCACGTCTTCTTCTCTGTGGTTCAGATGTTGGGGAAATTGAAAGGCTGAGATGCAGGAAAG AGGAGCTGGAAGAAGCTGTTAGTGCTTTAGAGGAGGATTTAAAATTGCTGATGACCGAGCAAAGATCCATAGATGAAGAAGAGGCTAAACTTCATAAACA GCGGGAGGAGATTGTCGGCAATGTGACACTGGAGATGCGAAAACGGCGTGAAATGGAGAACCGTGTTGATCAAAGGAAAAGGAAACTAGAGTCATTGCTG AGGGAGGATGACCAGGATGCTGTTATGGCAAAACTGATTGATGAGGCTGCAAACCTTAACACTCGGCGGTTGCAATGTGCAATTGATATGAAGAATTTAC TCGTCGACGCTGTTGCTTACAAATGGAATTTTGCTGAAAAACATATGACCTCCATTGAGTTTGATGCGAAGATTAGAGAACTGGAACACGGTCTGAAGCA GCCTGCAAAATTTGCTCAACAAGTAGCATGCCAATTGGAGTATTGCAAGAAGGAAACAGAGGATCATCGACAGCAACTCTTGGCTGCTAAAAGACATGCA GAATCAATTGCTATCATCACTCCAGAACTTGAGAAGGCTTTTCTTGAGATGCCAACTACTATTGAGGAATTGGAGGCTGCTATTCAAGATACTTTGTCTC AAGCCAATTCCACTCTTTCCTTGAACCAGAATGTGGTGGAAGAATATGAACACCGTCAGGGAAAGATAGAAGCCATTACCAAAAAACTTGAAGCCGATAA AGAAGAACTAAAAAAGTGTTTAGCTGAAATAGATGCCTTGAAGGAGAGTTGGCTTCCAACTTTGAGAAGCCTTGTTACTCAGATTAATGAAACTTTCAGC CATAACTTCCAGGAGATGGCAGTTGCAGGAGAAGTTTCATTGGATGAGCATGACAATGACTTTGATCAATTTGGAATATTGATAAAAGTGAAGTTCAGAG AAGCCGGACAACTTCAAGTTCTTAGTGCTCATCATCAATCTGGAGGGGAGCGTTCAGTTTCAACCATTCTGTATCTTGTTTCTCTTCAAGACCTCACAAA CTGCCCGTTTAGGGTAGTTGATGAGATAAATCAAGGAATGGACCCCACAAACGAAAGAAAGATGTTTCAGCAACTAGTGAGAGCTGCAAGCCAACCAAAC ACACCACAGTGTTTCTTACTCACCCCAAAGTTACTACCTAATTTGGAATACAGCGAGGCATGTAGCATTCTTAATATAATGAATGGACCTTGGATTGAGC AGCCTTCCAAAGCATGGAGCAGTGGAGAATGTTGGGGGGCTGTCACAGGGCTTCTGGGAGAAAGTCGATGCTGA
AA sequence Show only first row Show all	>Potri.001G262600.1 pacid=42788855 polypeptide=Potri.001G262600.1.p locus=Potri.001G262600 ID=Potri.001G262600.1.v4.1 annot-version=v4.1 MKRPSTREEPPSKRAKTSRGEDDYMPGNIIEIELRNFMTYDCLVCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSIGAYVKRGEESGHIK ISLRGSTKDEKITIIRRIDAHNKSEWLFNGKVASKKEVTEIMQQFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPIQHRALVDKSRELK TIEMAVKRNGETLNQLKALNAELEKDVERVRQREVLLKKAESMKKKLPWLKYDAIKADYLKAKEAEKDVKQKLEEAAKTLNNLREPIEKQKLEKPQMDAK CKRLSNLIKENAKRRMELLEKESSLGVQIRGKYKEMGDLKKEEESRQQRIIKAKEDLAIAEAEHRNLPVYEPPKDVLDKLRSQISDLKVSANQKRIQKQD KEKVLNQKNIALRHCVDRLKDMENKNNKLLQALRNSGAEKIFEAYHWLREHCQELNKEVYGPVLLEVNVSNRDHADYLEGHVPYYIWKSFITQDPHDRDF LVRNLKSFDVPILNYVRDKYRHKEPFFISNEMRELGIYSRLDQIFEAPDAVKEVLISQFGLEHSYIGSKETDQKAAEVAKLRVLDFWTPENHYRWSVSRY GGHVSGSVDPVDRSRLLLCGSDVGEIERLRCRKEELEEAVSALEEDLKLLMTEQRSIDEEEAKLHKQREEIVGNVTLEMRKRREMENRVDQRKRKLESLL REDDQDAVMAKLIDEAANLNTRRLQCAIDMKNLLVDAVAYKWNFAEKHMTSIEFDAKIRELEHGLKQPAKFAQQVACQLEYCKKETEDHRQQLLAAKRHA ESIAIITPELEKAFLEMPTTIEELEAAIQDTLSQANSTLSLNQNVVEEYEHRQGKIEAITKKLEADKEELKKCLAEIDALKESWLPTLRSLVTQINETFS HNFQEMAVAGEVSLDEHDNDFDQFGILIKVKFREAGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPTNERKMFQQLVRAASQPN TPQCFLLTPKLLPNLEYSEACSILNIMNGPWIEQPSKAWSSGECWGAVTGLLGESRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	0	1
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Potri.005G021700 [exp]	1.00	0.9142
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	2.82	0.9063
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.006G263700 [exp]	3.00	0.9053
AT2G44950		RDO4, HUB1	REDUCED DORMANCY 4, histone mo...		Potri.002G141300 [exp]	3.46	0.9032
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034700 [exp]	5.65	0.8684	ATMRP12.4
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	5.65	0.8971
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Potri.014G180200 [exp]	5.74	0.8673
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Potri.017G092600 [exp]	6.00	0.8935
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	6.48	0.9000
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	7.34	0.8723

Compare expression of checked genes

Potri.001G262600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.