Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 428 / 2e-134 disease resistance family protein / LRR family protein (.1) AT3G11010 268 / 7e-76 AtRLP34 receptor like protein 34 (.1) AT1G47890 262 / 4e-73 AtRLP7 receptor like protein 7 (.1) AT2G15080 256 / 5e-71 AtRLP19 receptor like protein 19 (.1.2) AT5G25910 249 / 8e-70 AtRLP52 receptor like protein 52 (.1) AT3G11080 251 / 1e-69 AtRLP35 receptor like protein 35 (.1) AT5G44700 251 / 1e-68 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G71400 244 / 7e-68 AtRLP12 receptor like protein 12 (.1) AT5G46330 246 / 2e-67 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20140 243 / 6e-66 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106900 [exp] 489 / 8e-157 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.010G107000 [exp] 484 / 1e-154 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 439 / 6e-138 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 437 / 4e-137 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 434 / 3e-136 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 433 / 9e-136 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025300 [exp] 430 / 5e-133 AT2G34930 314 / 1e-91 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 423 / 2e-131 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 407 / 6e-126 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016384 [exp] 751 / 0 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10029483 [exp] 750 / 0 AT2G34930 484 / 1e-155 disease resistance family protein / LRR family protein (.1) Lus10021973 [exp] 566 / 0 AT2G34930 313 / 2e-95 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 508 / 9e-164 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016337 [exp] 500 / 2e-160 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 496 / 2e-158 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 489 / 2e-156 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 488 / 5e-156 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 488 / 6e-156 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 485 / 8e-155 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G262800.1 pacid=42791182 polypeptide=Potri.001G262800.1.p locus=Potri.001G262800 ID=Potri.001G262800.1.v4.1 annot-version=v4.1 ATGGGGAAAGTTTCGATTCTTGGTTTGGTTCTTGCAGTTCTCGGTGTCCTGGCTGGAGAATTTGTTTGTAATGGAGACACCCTTTACATAAATTGTTCTC TGTCTGACCGAAAAGCTCTTACAGACTTCAAACATGGACTTGAAGATCCTGAGAACAGGCTCTCGTCGTGGAAAGGGACACACTGTTGTCAGTGGAGGGG AATCAGCTGTGACAATACTAATGGAGCTGTCATTTCCGTTGATCTCCACAACCCATATCCTGTAAGTTCTGCTGAATCTTCAACCAGGTATGGGTATTGG AACTTGAGTGGGGAGATTAGACCTTCATTGCTAAAACTCAAGTCGTTACAGCACTTAGATTTGAGTCTCAACACATTTAATAATATCCCAATTCCTACAT TCTTAGGATCCATGAGAAGTTTGAGATATTTAAATCTGTCAGAGGCTGGGTTTAGTGGTGCAGTTCCTTTAAATTTAGGAAACCTTTCTAGCTTGGAGTT TCTTGATGTTTCTTCTCCATTTTCAGGTCTAGCTGTTAGTAGTCTTGAGTGGGTCAGGGGTCTTGTCTCACTGAAACATCTAGCCATAAATGGAGTTGAC CTTTCCATGGTAGGATCCAATTGGCTTGGGGTATTAAACGTGCTTCCACATCTGGCTGAAATTCATCTCTCAGGTTGTGGTCTATCTGGTTCCGTTCTAT CTCATAGCTCTGTCAATTTTACTTCTCTTTCTGTGATAGACCTTAGTCTGAACCACTTTGATTCAATTTTCCCTGACTGGCTCGTAAATATTAGCAGCCT ATCCTACGTTGATTTAAGCAATTGTGGTTTGTATGGTAGGATACCCCTTGCTTTTAGTGAGCTACCAAGTCTTCAGTACTTGAGTCTTGCTATGAACGAT AATCTTTCTGCAAGTTGCTCTCAGTTGTTTCAAGGAAGTTGGAAAAAAATAGAGGTTCTCAGTTTGGCTGCAAATAAACTGCACGGTAAACTTCCCTCTT CCATAGGAAATATGTCATCTCTCACTAACTTTGATTTATTTTCCAATTCTGTCGAGGGTGGGATTCCTAGCTCTATTGGCAAACTTTGCAACTTGAAAAT TTTCGATTTATCTGGAAACAACTTGACAGGTAGTTTGCCTGAAGTCCTTGAAAGGACTAGTTGTGTTTCAAACAATCCCATGCCTAGTTTAATATACTTG AGACTAAGTGTCAATCATCTAGTGGGGAATTTGCCAGCTTGGTTAGGCGAGCTTGAAAATCTTGCAGAACTTACTCTGGACTATAACATGATTCAAGGGC CAATTCCTGCTTCTTTAGGCAACTTACATAACCTGACTATTTTGGGACTCGCGGGGAATCAACTAAATGGAAGTCTCCCTGATAGTTTTGGACAGCTTTC TCAATTGTGGAGCTTGGATGTCTCTTTTAATCATCTCTCAGGTTTTATCACTGAATTGCATTTCTCAAGGCTTCATAAACTAAAGTTCTTGCATTTGTCT TCCAATTCATTCAATTTCAATGTCAGCTCCAATTGGATACCTCCATTTCAGCTCCGAAATCTTGATCTTGGTTCCTGTCATTTGGGTCCTTCTTTTCCAG CTTGGCTTAGAACTCAGAAGGAAGTGGGATTTCTAGATTTCTCGAACGCTAGCATCTCAGATACTATACCCAACTGGTTTTGGGAAATATCCTCCAACCT ATCACTGGTAAATGTTTCTTTCAATCAGTTACAGGGCCTTCTACCAAATCCATTAAGTGTAGCTCCCTTTGCAGATGTTGATTTCAGCTCCAACCTTTTG GAAGGACCTATTCCACTTCCCACTGTGGGGATTGAATCGCTAGACCTCTCTAATAATCACTTTTCAGGTTCTATTCCACAAAACATAACTAAATCCATGC CAGACCTGATCTTTCTTTCTCTTTCGAATAACCAATTGACAGGAGCTATCCCAGCTTCAATAGGAGATATGTTGATTCTTCAAGTCATTGACCTCTCAAA CAACAGCTTAGAACGCAACATCCCTTCAAGTATAGGGAATTCTTCTTTGTTAAAGGCTCTAGACCTTAGTCACAACAATCTATCCGGGGTGATTCCAGAA CTTTTAGGTCAATTAAATCAGCTTCAGTCAATTCACCTGAGCAATAATAATCTCACAGGAAAACTTCCATTATCTTTGCAAAATTTATCGAGCTTGGAAA CATTGGATCTCGGAAACAACAGACTATCAGGTAACATTCCACTGTGGATTGGAGGTGGCTTTCCACAACTTAGAATACTCAGCCTAAGGTCAAATGCATT TTCCGGTGAAATTCCATCCAACCTGGCAAACTTGAGCTCGCTGCAAGTCCTTGACCTTGCAGATAACAAGTTGACTGGTGCCATTCCAGAAACTTTGGGA GATTTTAAAGCCATGTCGAAGGAGCAATACGTAAACCAATATCTGCTCTATGGGAAATACAGAGGTCTGTACTATGGAGAGAGATTTGTGATGAACATAA AAGGTGGTCCTCAAAAATACACCAAAACTCTTTCCCTAGTCACTAGCATAGACCTTTCCATCAACAGCTTAAATGGAGAATTCCCTGATCAAATCACAAA GTTGGTTGGTTTAGTGACTTTGAACTTGTCAAAAAACCAAGTCAGCGGCCATGTTCCTGATAACATTTCAAGTTTGCGCCAACTATCATCTCTTGACCTC TCAAGTAACAGACTTTCAGGTGCAATTCCTTCCAGCTTGCCAGCATTATCATTTTTAAGCTACCTGAACCTGTCCAACAATAATTTATCTGGCATGATCC CGTATAGAGGGCAGATGACAACTTTTGAAGCATCCTCTTTTTCTGGGAATCCCGGTCTTTGCGGACCTCCACTGGTCCTCCAGTGCCAAGGTGATGATTC AGGTAAAGGAGGGACTAGTACTATAGAAGACAGTGATGATGGCTTCATTGACAGTTGGTTTTACTTGAGTATTGGACTGGGATTTGCAGCTGGTATTCTG GTTCCTATTCTTGTATTTGCAATCAAGAAACCATGGAGACTTTCCTACTTTGGTTTTGTGGACAAAATCGTTGACCGAGCATTGTGA
AA sequence Show only first row Show all	>Potri.001G262800.1 pacid=42791182 polypeptide=Potri.001G262800.1.p locus=Potri.001G262800 ID=Potri.001G262800.1.v4.1 annot-version=v4.1 MGKVSILGLVLAVLGVLAGEFVCNGDTLYINCSLSDRKALTDFKHGLEDPENRLSSWKGTHCCQWRGISCDNTNGAVISVDLHNPYPVSSAESSTRYGYW NLSGEIRPSLLKLKSLQHLDLSLNTFNNIPIPTFLGSMRSLRYLNLSEAGFSGAVPLNLGNLSSLEFLDVSSPFSGLAVSSLEWVRGLVSLKHLAINGVD LSMVGSNWLGVLNVLPHLAEIHLSGCGLSGSVLSHSSVNFTSLSVIDLSLNHFDSIFPDWLVNISSLSYVDLSNCGLYGRIPLAFSELPSLQYLSLAMND NLSASCSQLFQGSWKKIEVLSLAANKLHGKLPSSIGNMSSLTNFDLFSNSVEGGIPSSIGKLCNLKIFDLSGNNLTGSLPEVLERTSCVSNNPMPSLIYL RLSVNHLVGNLPAWLGELENLAELTLDYNMIQGPIPASLGNLHNLTILGLAGNQLNGSLPDSFGQLSQLWSLDVSFNHLSGFITELHFSRLHKLKFLHLS SNSFNFNVSSNWIPPFQLRNLDLGSCHLGPSFPAWLRTQKEVGFLDFSNASISDTIPNWFWEISSNLSLVNVSFNQLQGLLPNPLSVAPFADVDFSSNLL EGPIPLPTVGIESLDLSNNHFSGSIPQNITKSMPDLIFLSLSNNQLTGAIPASIGDMLILQVIDLSNNSLERNIPSSIGNSSLLKALDLSHNNLSGVIPE LLGQLNQLQSIHLSNNNLTGKLPLSLQNLSSLETLDLGNNRLSGNIPLWIGGGFPQLRILSLRSNAFSGEIPSNLANLSSLQVLDLADNKLTGAIPETLG DFKAMSKEQYVNQYLLYGKYRGLYYGERFVMNIKGGPQKYTKTLSLVTSIDLSINSLNGEFPDQITKLVGLVTLNLSKNQVSGHVPDNISSLRQLSSLDL SSNRLSGAIPSSLPALSFLSYLNLSNNNLSGMIPYRGQMTTFEASSFSGNPGLCGPPLVLQCQGDDSGKGGTSTIEDSDDGFIDSWFYLSIGLGFAAGIL VPILVFAIKKPWRLSYFGFVDKIVDRAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.001G262800 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	1.73	0.9684
AT5G53110			RING/U-box superfamily protein...		Potri.015G017800 [exp]	3.46	0.9511
AT4G21895			DNA binding (.1)		Potri.011G001901 [exp]	4.89	0.9436
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	5.09	0.9536
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120601 [exp]	8.36	0.9332
AT4G20820			FAD-binding Berberine family p...		Potri.011G162968 [exp]	9.38	0.9357
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.013G131200 [exp]	9.48	0.9393
AT1G49570			Peroxidase superfamily protein...		Potri.005G135300 [exp]	9.79	0.9354	PRX1.8
					Potri.013G070350 [exp]	10.53	0.9536
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125851 [exp]	11.66	0.9048

Compare expression of checked genes

Potri.001G262800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.