Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 384 / 2e-124 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 367 / 1e-117 Concanavalin A-like lectin protein kinase family protein (.1) AT4G02410 319 / 2e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 302 / 6e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 300 / 5e-92 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 299 / 3e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 295 / 3e-90 Concanavalin A-like lectin protein kinase family protein (.1) AT1G70130 284 / 3e-86 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 284 / 4e-86 RLK receptor lectin kinase (.1) AT3G53810 284 / 5e-86 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G283866 [exp] 1127 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 1127 / 0 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283212 [exp] 1118 / 0 AT5G10530 385 / 3e-124 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283200 [exp] 1088 / 0 AT5G10530 382 / 8e-125 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 1082 / 0 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 1077 / 0 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 971 / 0 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 890 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 522 / 3e-178 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033783 [exp] 478 / 1e-159 AT5G10530 468 / 2e-156 Concanavalin A-like lectin protein kinase family protein (.1) Lus10014648 [exp] 473 / 7e-158 AT5G10530 462 / 4e-154 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 448 / 8e-150 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 439 / 5e-145 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 443 / 2e-140 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10007075 [exp] 412 / 3e-139 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 420 / 1e-137 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 406 / 5e-135 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 412 / 8e-135 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 411 / 4e-134 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.001G262866.1 pacid=42791128 polypeptide=Potri.001G262866.1.p locus=Potri.001G262866 ID=Potri.001G262866.1.v4.1 annot-version=v4.1 ATGGGAAAGCTTCCTGTTCCATTTCTTCCTTTTGTTTTCTCAACTTTCTTCACACTAATAATCCCTTCTGCGAGTGGATTATCTTTCAACTTCACCAGCT TCATTGTTGGCGACCGAAACATTTCATACGAGCAGGACGCATATCCCGCAGAAGGAGCTGTTCAGCTCACCAAAAATCTAAGAAATGCTAATATGAGTTT AATTTTCGGTCGAGCCACGTATTACAAACCGATGCAGCTTTGGGACAAGGCCTCAGGGAATCTTACAGACTTCACCACCCATTTCTCTTTTTCCATCGAT TCGCAAGGTCGACGTGCATACGGAGATGGATTGGCTTTCTTTCTTGCGCCAGAAGGATCAAAGCTTCCGCCTAATCTCTCTCAAGGTCGAAGTCTAGGTC TTACAAGGAATGATCAGCAACTAAACACAACGGATAATCATTTTGTTGCTGTGGAGTTCGATATCTATAAAAATTATTTTGATCCACCAGGCGAGCATGT AGGTATTGACATCAACTCTATGCAATCTGTAAATAATATTACTTGGCTGTGTAATATTAGTGGAGGGATAAAAACTGACGCTTGGATTAGTTATAATTCA AGTACACATAATCTGAGTGTCGCCTTCACCGGTTATAGAAATAACACTGTAGAAATGCAATTCCTTAGTCAAATAGTTAGCTTGAGGGATTACCTACCAG AAAGAGTTAGTTTTGGCTTTTCGGCTTCAACAGGAAGTGCATCTGCCCTACATACCCTTTACTCGTGGGATTTTAGTTCAAGCTTAGAAATTGATGATAA TGTTACCAATCCAATAGATCCAGATACCAATACATTAGATCCAGCTGCAGCTTCTCCGCCAAATGGTGGTTCACGTAGGAATCGGAAAAAGAACAGGACA GGACTGGCAGTTGGATTGGGTGTTGGGGGTGGTGCTATAGTTGTTGGGGCCGCTTTGGTTGGGTTTGTTATTAAGTTTATGTGTGGGCACGAAGAAGATG AAGAAGGTGGTCATGTCGTTGAAGAGTACATGGATGAAGAATTTGAAAGGGGAACAGGACCAAAGAAGTTCTCTTACCAAGAATTGGCTCGAGCTACAAG TAACTTCAAGGATGAAGAGAAGCTAGGTGAGGGTGGGTTCGGTGGTGTCTATAAAGGTTTTTTGAAGGACATTGATTCATTCGTTGCGGTGAAGAGAGTA TCAAGAGGTTCTAAACAAGGGATTAAAGAATATGCAGCAGAGGTAAAGATCATTAGCCGATTGAGGCACAGAAACTTAGTCCAACTCATTGGTTGGTGTC ATGAAAGAAAGGAGCTTTTACTTGTTTACGAATTCATGTCTCATGGCAGCTTAGACTCCCATCTTTTCAAAGAAACTAGCTTGTTGACATGGGAGTTGAG GTACAAAATCGTGCAAGGCTTGGCATCGGGGCTGTTGTACTTGCATGAAGAATGGGAACAATGTGTGGTGCATAGAGATATAAAGTCTAGCAACATTATG TTGGACTCAGAATTCAATGCTAAGCTTGGGGATTTTGGTTTGGCTAGGCTTGTGGACCATGGAAAAGGTTCTCAAACAACAGTTTTGGCAGGGACTATGG GCTACATGGCTCCAGAGTGTGCAATGACAGGCAAGGCTAGCAGAGAGTCAGATGTTTACAGTTTTGGAATTGTTGCATTGGAGATAGCTTGTGGAAGAAA ACCTATCAACCCAAAGGCCAGTAATGAAGATCGAGTGTCCATGGTGCAGTGGGTTTGGGAGCTCTATGGTGAAGGAAAGCTACTTGAAGCAGTTGACCCA AGACTATGCGGAGATTTTAACAAGACGCAGATGGAACGCTTGATGATTGTCGGCCTTTCGTGTGCTCATCCGGATGAACATCTTAGACCCTCAATTCGGC AAGCACTTCACGTACTTAATTTTGATGCTCCATTGCCTATTCTCCCATCAAAGATGCCCGTGCCATCATATTTCGCCCCGCCAATATCTGCATCTTCACT TTCAATAATGTCCTATGGCCTTAACAGATTCTGA
AA sequence Show only first row Show all	>Potri.001G262866.1 pacid=42791128 polypeptide=Potri.001G262866.1.p locus=Potri.001G262866 ID=Potri.001G262866.1.v4.1 annot-version=v4.1 MGKLPVPFLPFVFSTFFTLIIPSASGLSFNFTSFIVGDRNISYEQDAYPAEGAVQLTKNLRNANMSLIFGRATYYKPMQLWDKASGNLTDFTTHFSFSID SQGRRAYGDGLAFFLAPEGSKLPPNLSQGRSLGLTRNDQQLNTTDNHFVAVEFDIYKNYFDPPGEHVGIDINSMQSVNNITWLCNISGGIKTDAWISYNS STHNLSVAFTGYRNNTVEMQFLSQIVSLRDYLPERVSFGFSASTGSASALHTLYSWDFSSSLEIDDNVTNPIDPDTNTLDPAAASPPNGGSRRNRKKNRT GLAVGLGVGGGAIVVGAALVGFVIKFMCGHEEDEEGGHVVEEYMDEEFERGTGPKKFSYQELARATSNFKDEEKLGEGGFGGVYKGFLKDIDSFVAVKRV SRGSKQGIKEYAAEVKIISRLRHRNLVQLIGWCHERKELLLVYEFMSHGSLDSHLFKETSLLTWELRYKIVQGLASGLLYLHEEWEQCVVHRDIKSSNIM LDSEFNAKLGDFGLARLVDHGKGSQTTVLAGTMGYMAPECAMTGKASRESDVYSFGIVALEIACGRKPINPKASNEDRVSMVQWVWELYGEGKLLEAVDP RLCGDFNKTQMERLMIVGLSCAHPDEHLRPSIRQALHVLNFDAPLPILPSKMPVPSYFAPPISASSLSIMSYGLNRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G262866 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G283200 [exp]	1.00	0.9218
AT3G53270			Small nuclear RNA activating c...		Potri.004G126760 [exp]	2.44	0.8987
AT5G61820			unknown protein		Potri.012G110300 [exp]	2.82	0.8574
AT1G04270		RPS15	cytosolic ribosomal protein S1...		Potri.005G055401 [exp]	4.89	0.8490
AT5G05550	Trihelix		sequence-specific DNA binding ...		Potri.008G071300 [exp]	6.70	0.8412
AT5G24490			30S ribosomal protein, putativ...		Potri.011G054700 [exp]	11.22	0.8169
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	12.04	0.8565
AT1G73875			DNAse I-like superfamily prote...		Potri.012G057100 [exp]	12.24	0.8219
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Potri.008G124700 [exp]	12.32	0.8431
AT1G30220		ATINT2	ARABIDOPSIS THALIANA INOSITOL ...		Potri.004G133420 [exp]	12.48	0.7979

Compare expression of checked genes

Potri.001G262866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.