Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 734 / 0 ATPAO1, APAO polyamine oxidase 1 (.1) AT1G65840 131 / 5e-33 ATPAO4 polyamine oxidase 4 (.1) AT2G43020 129 / 2e-32 ATPAO2 polyamine oxidase 2 (.1) AT3G59050 129 / 2e-32 ATPAO3 polyamine oxidase 3 (.1) AT1G62830 110 / 2e-25 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT3G10390 100 / 3e-22 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT4G16310 99 / 2e-21 LDL3 LSD1-like 3 (.1) AT3G13682 93 / 1e-19 LDL2 LSD1-like2 (.1) AT4G29720 84 / 4e-17 ATPAO5 polyamine oxidase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058200 [exp] 902 / 0 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 413 / 1e-140 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.015G074600 [exp] 403 / 9e-137 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.002G055300 [exp] 130 / 1e-32 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.017G144001 [exp] 129 / 2e-32 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.005G207300 [exp] 125 / 4e-31 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1) Potri.004G075800 [exp] 125 / 6e-31 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.002G013100 [exp] 116 / 3e-27 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.011G127600 [exp] 101 / 2e-22 AT3G13682 959 / 0.0 LSD1-like2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039599 [exp] 762 / 0 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 625 / 0 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10019725 [exp] 362 / 8e-121 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10041898 [exp] 350 / 2e-113 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10042168 [exp] 328 / 2e-107 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10042127 [exp] 326 / 4e-107 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10020726 [exp] 129 / 3e-32 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 128 / 8e-32 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1) Lus10005021 [exp] 119 / 1e-28 AT2G43020 720 / 0.0 polyamine oxidase 2 (.1) Lus10015996 [exp] 110 / 2e-25 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01593 [poplar] [flax] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.001G263400.1 pacid=42789386 polypeptide=Potri.001G263400.1.p locus=Potri.001G263400 ID=Potri.001G263400.1.v4.1 annot-version=v4.1 ATGGATTCCCCTCCACGCTCCTCCGTCATCATCATCGGCGCTGGAATATCAGGTGTATCCGCGGGAAAGGTATTGGCGGAGAATGGAATAGAGGATATGG TGATTCTGGAAGCTTCAGACCGTATAGGTGGTAGGATCCGAAAGGATAATTTCGGTGGCGTTTCGGTTGAGCTTGGAGCCGGTTGGATCGCCGGAGTTGG TGGTAAAGAGTCCAACCCTGTTTGGGAACTTGCTTCTCAATCTGGCCTCCGCACTTGTTTCTCTGATTACAGCAATGCTCGCTATAATATCTATGATCGC AGTGGGAAAATATATCCTAGTGGAGTGGCGGCAGACTCGTACAAGAAGGCGGTGGACTTAGCAATTGAGAATCTGAAGAGTTTAGAAGCAAACCTTGTCG GTGAAGTTAATGAACCGCCTAGTTCACCAAAGACGCCAATAGAGCTTGCCATTGACTTTATCCTTCATGACTTTGAGATGGCAGAGGTAGAGCCAATATC AACGTTTGTAGATTTTGGAGAAAGAGAATTTCTAGTAGCAGATGAAAGAGGCTATGAGCACCTGCTTTACAAAATGGCTGAGAATTTTCTTTTAATCTCT GAGGGCAAAATCTTGGACAACCGTCTCAAACTCAACAAGGTTGTCAGGGAATTACAGCACTCGAGAAACGGCGTTGTTGTGAAAACGGAGGATGGTTGCA TCTACGAAGCCAATTATGTGATTTTGTCAGTAAGCATTGGTGTCCTCCAGAGTGATCTCATTTCCTTCAGGCCTCCCTTACCCAGGTGGAAAACAGAAGC CATAGAGAAATGTGATGTGATGGTATATACAAAGATTTTCCTGAACTTCCCATACAAATTCTGGCCATGTGGTCCCGGAAAAGAGTTCTTCATCTACGCT CACGAGCGAAGGGGATACTACACTTTCTGGCAGCACATGGAAAATGCATATCCTGGTTCGAATATCCTGGTCGTGACTTTGACGAATGGGGAATCGAAAC GCGTTGAAGCACAGTCTGACAAGGAGACGTTGGAAGAAGCCATGGGGGTGCTTAGGGACATGTTTGGACCCCATATACCCAATGCCACTGATATACTTGT GCCCCGCTGGTGGAACAACAGATTCCAGCGTGGCAGCTACAGCAACTACCCCATCATTTCAGACAATCAAGATGTTCATGACATTAAGGCCCCAGTAGGA CGCATCTTCTTCACTGGTGAACACACCAGTGAACGATTTAGTGGTTACGTCCATGGTGGATATCTTGCTGGTATTGACACAAGCAATTCACTAGTGGAAG AAATGAGAAAAGAGAAGGAAAGAAAAAGTGAGAGTCAAACATTCTTGTTAGAGCCCTTGCTGGCATTGACAGGATCATTAACACTCACACAGACAGAGGC AGTCCCAAGCCTTCATAAATGTGACATTCCTACACACCTGTATCTTAGTGGCAAGGTTGGCCTTCAAGAAGCGATATTATGA
AA sequence Show only first row Show all	>Potri.001G263400.1 pacid=42789386 polypeptide=Potri.001G263400.1.p locus=Potri.001G263400 ID=Potri.001G263400.1.v4.1 annot-version=v4.1 MDSPPRSSVIIIGAGISGVSAGKVLAENGIEDMVILEASDRIGGRIRKDNFGGVSVELGAGWIAGVGGKESNPVWELASQSGLRTCFSDYSNARYNIYDR SGKIYPSGVAADSYKKAVDLAIENLKSLEANLVGEVNEPPSSPKTPIELAIDFILHDFEMAEVEPISTFVDFGEREFLVADERGYEHLLYKMAENFLLIS EGKILDNRLKLNKVVRELQHSRNGVVVKTEDGCIYEANYVILSVSIGVLQSDLISFRPPLPRWKTEAIEKCDVMVYTKIFLNFPYKFWPCGPGKEFFIYA HERRGYYTFWQHMENAYPGSNILVVTLTNGESKRVEAQSDKETLEEAMGVLRDMFGPHIPNATDILVPRWWNNRFQRGSYSNYPIISDNQDVHDIKAPVG RIFFTGEHTSERFSGYVHGGYLAGIDTSNSLVEEMRKEKERKSESQTFLLEPLLALTGSLTLTQTEAVPSLHKCDIPTHLYLSGKVGLQEAIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Potri.001G263400 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.017G121700 [exp]	3.00	0.8086
AT1G09620			ATP binding;leucine-tRNA ligas...		Potri.003G003900 [exp]	4.24	0.7749
					Potri.010G061000 [exp]	7.34	0.7834
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.018G006300 [exp]	18.86	0.7690	Pt-FZF.1
AT1G80440			Galactose oxidase/kelch repeat...		Potri.001G178300 [exp]	20.97	0.7643
AT3G62550			Adenine nucleotide alpha hydro...		Potri.013G009800 [exp]	21.21	0.7626
AT5G19875			unknown protein		Potri.003G216100 [exp]	25.03	0.7245
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Potri.002G240800 [exp]	25.49	0.7173
					Potri.016G023320 [exp]	27.03	0.7255
AT3G03270			Adenine nucleotide alpha hydro...		Potri.017G144301 [exp]	28.28	0.7390

Compare expression of checked genes

Potri.001G263400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.