Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13710 587 / 0 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 269 / 5e-88 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 268 / 6e-88 SMT3 sterol methyltransferase 3 (.1) AT1G48600 82 / 4e-17 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G18000 80 / 3e-16 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 80 / 3e-16 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 69 / 8e-13 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT2G41040 50 / 1e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69520 49 / 2e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G69526 49 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058600 [exp] 650 / 0 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.016G056000 [exp] 491 / 1e-175 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 270 / 2e-88 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 267 / 2e-87 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.013G077000 [exp] 91 / 2e-20 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.015G039000 [exp] 82 / 3e-17 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047400 [exp] 82 / 8e-17 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G095100 [exp] 49 / 3e-06 AT1G78140 442 / 2e-156 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.018G120000 [exp] 47 / 1e-05 AT2G41040 418 / 6e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029498 [exp] 360 / 7e-125 AT5G13710 380 / 2e-133 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10005625 [exp] 251 / 5e-81 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10023995 [exp] 223 / 6e-71 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10039600 [exp] 161 / 9e-49 AT5G13710 174 / 2e-54 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Lus10018010 [exp] 86 / 4e-18 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 85 / 7e-18 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042006 [exp] 83 / 3e-17 AT3G18000 841 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009537 [exp] 82 / 3e-17 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10031348 [exp] 83 / 4e-17 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020357 [exp] 79 / 3e-16 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain CL0063 [poplar] [flax] PF08498 [poplar] [flax] Sterol_MT_C Sterol methyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G263700.3 pacid=42791976 polypeptide=Potri.001G263700.3.p locus=Potri.001G263700 ID=Potri.001G263700.3.v4.1 annot-version=v4.1 ATGTCGAAAGCTGGTGCATTGGATCTCGCTTCCGGTCTCGGTGGAAAGATCGATAAAAGCGATGTTCTCTCCTCCGTTGAAAAGTATGAAAAGTATCATG TTTATTATGGAGGTGCTGAGGAAGACAGAAAAGCCAATTACTCTGACATGGTAAATAAATATTATGATCTTGTTACCAGTTTTTATGAGTTCGGCTGGGG GGAGTCTTTCCATTTTGCACCCAGATTCAAAGGGGAGTCTCTCCGTGAGAGCATCAAGCGACATGAGCACTTTCTTGCTTTGCAACTTGGCCTGAAACCT GGACAGAAGGTTTTGGATGTAGGATGTGGAATTGGTGGACCTCTTAGAGAAATTGCGCGATTCAGCTCAACATCAGTAACAGGGTTGAACAACAACGAGT ATCAGATATCAAGGGGAAAGGAACTCAATCGCATTGCAGGAGTTGACAGGACATGTGATTTTTTGAAGGCTGATTTCATGAAAATGCCATTCCCTGATAA CAGTTTTGACGCTGTATATGCAATTGAAGCTACATGCCATGCACCAGATGCATATGGATGCTACAGTGAGATTTACAGGGTATTGAAGCCAGGACAATGT TTTGCTGCATATGAGTGGTGCATGACTGATGCTTTCAATCCACATGACCAAGAACATCAAAAAATTAAGTCAGAAATAGAGATTGGTGATGGCCTTCCAG ACATTAGGTCGACTGGGCAATGCATTGATGCTCTAAAGAAAGCTGGTTTTGAGGTCATATGGTCAAAAGATCTTGCAGTGGGCTCACCTATGCCATGGTA CCTGCCTTTGGACACAACTCACTTCTCACTGAATAGCTTCCGTTTAACAGCTGTCGGGAGATTCTTTACAAGAAATATGGTCAAAGCCCTGGAATATTTA GGAGTTGCACCCAAAGGAAGTCAAAGGGTTCAAGATTTTCTTGAGAAGGCAGCACAGGGATTGGTTGAAGGTGGAAGGAAGGAGATTTTCACCCCACTGT TTTTCTTTTTTGCTCGGAAGCCACATTCAGACAGCCAGTAA
AA sequence Show only first row Show all	>Potri.001G263700.3 pacid=42791976 polypeptide=Potri.001G263700.3.p locus=Potri.001G263700 ID=Potri.001G263700.3.v4.1 annot-version=v4.1 MSKAGALDLASGLGGKIDKSDVLSSVEKYEKYHVYYGGAEEDRKANYSDMVNKYYDLVTSFYEFGWGESFHFAPRFKGESLRESIKRHEHFLALQLGLKP GQKVLDVGCGIGGPLREIARFSSTSVTGLNNNEYQISRGKELNRIAGVDRTCDFLKADFMKMPFPDNSFDAVYAIEATCHAPDAYGCYSEIYRVLKPGQC FAAYEWCMTDAFNPHDQEHQKIKSEIEIGDGLPDIRSTGQCIDALKKAGFEVIWSKDLAVGSPMPWYLPLDTTHFSLNSFRLTAVGRFFTRNMVKALEYL GVAPKGSQRVQDFLEKAAQGLVEGGRKEIFTPLFFFFARKPHSDSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Potri.001G263700 [exp]	0	1
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.011G094400 [exp]	2.82	0.9397
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	3.16	0.9483
					Potri.008G195700 [exp]	6.32	0.9255
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Potri.009G026800 [exp]	8.48	0.9171
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.002G034100 [exp]	9.74	0.9335	APFI.1
AT3G12390			Nascent polypeptide-associated...		Potri.003G190800 [exp]	9.79	0.9365
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	10.00	0.9339
AT1G79680		ATWAKL10	WALL ASSOCIATED KINASE (WAK)-L...		Potri.018G148498 [exp]	10.58	0.9126
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Potri.008G208000 [exp]	11.48	0.9136
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Potri.002G020249 [exp]	12.96	0.9022

Compare expression of checked genes

Potri.001G263700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.