Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09680 257 / 2e-87 RLF reduced lateral root formation (.1.2) AT1G26340 65 / 2e-13 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G53560 62 / 2e-12 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G32720 60 / 3e-11 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT3G61580 58 / 9e-10 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G48810 56 / 9e-10 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G77760 58 / 1e-09 GNR1, NIA1 nitrate reductase 1 (.1) AT2G46650 55 / 1e-09 B5 #1, B5#1, ATCB5-C ARABIDOPSIS CYTOCHROME B5 ISOFORM C, cytochrome B5 isoform C (.1) AT2G46210 56 / 6e-09 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT1G37130 56 / 7e-09 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242500 [exp] 62 / 5e-12 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 58 / 9e-11 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.012G024600 [exp] 56 / 9e-10 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.005G172400 [exp] 57 / 2e-09 AT1G37130 1400 / 0.0 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) Potri.002G088600 [exp] 57 / 2e-09 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1) Potri.017G054300 [exp] 54 / 3e-09 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.001G314200 [exp] 53 / 7e-09 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.015G007600 [exp] 53 / 8e-09 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.002G165800 [exp] 54 / 2e-08 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039342 [exp] 268 / 1e-90 AT5G09680 253 / 8e-85 reduced lateral root formation (.1.2) Lus10019013 [exp] 212 / 9e-69 AT5G09680 216 / 1e-70 reduced lateral root formation (.1.2) Lus10000651 [exp] 62 / 3e-12 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 62 / 4e-12 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10036973 [exp] 62 / 6e-12 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10022357 [exp] 61 / 1e-11 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10010111 [exp] 59 / 7e-11 AT2G32720 137 / 8e-43 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10043137 [exp] 57 / 4e-10 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10032612 [exp] 57 / 4e-10 AT2G32720 218 / 2e-74 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10012615 [exp] 56 / 6e-10 AT2G32720 135 / 4e-42 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G263800.1 pacid=42791412 polypeptide=Potri.001G263800.1.p locus=Potri.001G263800 ID=Potri.001G263800.1.v4.1 annot-version=v4.1 ATGGATAATGACAATGATTTCACCTTTTGCCAGGTGGGATTGCCTGTTGATAAAAATGAACTCGAGGCGGAGAATCTTGCATCGGATATTGGGGGCATAA TTATTAAAGATGGATTTTCTAACGGCACTAATAGTAGTCAGGGTGGTGGTGTTGTGTGGAGAGATAGCTTGCCTAGTGATGCTGATTCCAAGAACGAGAG AACCGTTGGTTCTCTGTCTTTCAATGTTATTGATGCATCGGCTCGGGGAGAGTCAAGTGGAGTTCCTAGACAAGTGGCATCTGGAAATGCTGGAACTTCA GCTAAGAATTTTGATGAAAAGAAAGTTTCTGCTAGGAAGCCTGTGGCTCGAAGTAAGGTTCCGTTTGAGAAAGGTTATAGCCAAATGGATTGGCTTAAAC TCACTCGAACTCATCCTGATCTTGCAGGATTGAAGGGACAGTCCAACAAGAGGCTTATTTCCATGGATGAAGTTAAACTACACCAAACAGAAGGATCCAT GTGGACTGTTTTAAAAGGTCGTGTCTACAATTTGTCTCCATACCTCAAGTTTCATCCAGGAGGTGCTGATATACTGATGAAGGCAGTAGGAAAAGACTGT ACATCTTTATTCAACAAATACCATGCCTGGGTGAATGCTGAATTCTTGCTGGAGAAGTGCCTCGTGGGCACTTTGGATGCAGGTCAGTGA
AA sequence Show only first row Show all	>Potri.001G263800.1 pacid=42791412 polypeptide=Potri.001G263800.1.p locus=Potri.001G263800 ID=Potri.001G263800.1.v4.1 annot-version=v4.1 MDNDNDFTFCQVGLPVDKNELEAENLASDIGGIIIKDGFSNGTNSSQGGGVVWRDSLPSDADSKNERTVGSLSFNVIDASARGESSGVPRQVASGNAGTS AKNFDEKKVSARKPVARSKVPFEKGYSQMDWLKLTRTHPDLAGLKGQSNKRLISMDEVKLHQTEGSMWTVLKGRVYNLSPYLKFHPGGADILMKAVGKDC TSLFNKYHAWVNAEFLLEKCLVGTLDAGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09680		RLF	reduced lateral root formation...		Potri.001G263800 [exp]	0	1
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.014G130700 [exp]	1.00	0.8168	GRP2.2
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.007G022700 [exp]	10.24	0.7789
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.013G058300 [exp]	11.57	0.7816	Pt-GDH1.2
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	14.31	0.6960
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Potri.010G002000 [exp]	17.77	0.7779	Pt-PDK.1
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G131100 [exp]	19.74	0.7608	Pt-CYTGS.5
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.016G037600 [exp]	26.45	0.7373
AT1G45000			AAA-type ATPase family protein...		Potri.009G120500 [exp]	33.22	0.7110
AT5G10980			Histone superfamily protein (....		Potri.002G100200 [exp]	35.63	0.6602
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Potri.019G040400 [exp]	37.70	0.7177

Compare expression of checked genes

Potri.001G263800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.