Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08030 515 / 0 Protein of unknown function, DUF642 (.1.2) AT2G41810 450 / 6e-159 Protein of unknown function, DUF642 (.1) AT2G41800 437 / 1e-153 Protein of unknown function, DUF642 (.1) AT4G32460 413 / 3e-144 Protein of unknown function, DUF642 (.1.2) AT5G11420 411 / 1e-143 Protein of unknown function, DUF642 (.1) AT5G25460 408 / 2e-142 Protein of unknown function, DUF642 (.1) AT1G80240 387 / 3e-134 Protein of unknown function, DUF642 (.1) AT1G29980 316 / 5e-106 Protein of unknown function, DUF642 (.1.2) AT2G34510 301 / 7e-100 Protein of unknown function, DUF642 (.1) AT5G14150 133 / 2e-35 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058800 [exp] 669 / 0 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050300 [exp] 498 / 6e-178 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050400 [exp] 492 / 1e-175 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 486 / 3e-173 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G250100 [exp] 438 / 5e-154 AT5G11420 598 / 0.0 Protein of unknown function, DUF642 (.1) Potri.018G031100 [exp] 426 / 3e-148 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 387 / 8e-134 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 387 / 1e-133 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 311 / 8e-104 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029501 [exp] 589 / 0 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10039602 [exp] 586 / 0 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 509 / 0 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 508 / 0 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 507 / 0 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2) Lus10029503 [exp] 497 / 6e-178 AT3G08030 465 / 4e-166 Protein of unknown function, DUF642 (.1.2) Lus10031067 [exp] 442 / 3e-155 AT2G41810 478 / 1e-169 Protein of unknown function, DUF642 (.1) Lus10019727 [exp] 430 / 1e-151 AT3G08030 392 / 3e-137 Protein of unknown function, DUF642 (.1.2) Lus10035451 [exp] 427 / 3e-149 AT2G41810 476 / 1e-168 Protein of unknown function, DUF642 (.1) Lus10013112 [exp] 425 / 6e-149 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.001G263900.2 pacid=42791377 polypeptide=Potri.001G263900.2.p locus=Potri.001G263900 ID=Potri.001G263900.2.v4.1 annot-version=v4.1 ATGGCCGTTGGGATCTCACTTTTGCTTGCATCATTCTTGCTCTTCACTACCTCTGCTTTAGCTGCTACTTACATGGAAGGCTTTCTAAAAAATGGCAACT TTGAAGAGAAACCAAAACCTGGCGCGATCAAGAAAACAGTCCTTAAAGGAAAATATGCGCTTCCCAGCTGGGAAATCAATGGATTCGTAGAGTACATCTC TGCTGGGCCACAACCTGGTGGCATGTACTTTAATGTGGCTCATGGTGTCCATGCAGTAAGGCTAGGCAATGAGGCCTCGATTTCTCAAACAATAACAATA AAAGCAGGCTCTCTATATGCCCTCACATTTGGTGCATCAAGAACTTGTGCCCAAGATGAGGTGTTGAGAGTCTCAGTTGGGACCGTGTTTGGGGACCTGC CCTTGCAGACACTGTATAGTAGCAATGGCGGAGACACTTATGCTTGGGGATTTAAACTCAATGCCACTGTTGTTAAAGTGTCATTTCGCAATACTGGAGT CCAAGAGGACCCTGCCTGTGGGCCACTCATTGATGCAGTTGCTATCAAGGAGCTCTTTCCACCAATGCCCACAAGAGATAACCTTGTAAAGAATCATGGC TTTGAGGAGGGTCCTCATCGGTTAGTAAACACATCCAGTGGTGTCCTCCTCCCTCCAAGACAAGAAGATCTCACATCTCCACTTCCCGGCTGGATGATCG AATCACTTAAAGCTGTGAAGTTCATTGACAAAAAGCACTTCAACGTTCCTTTTGGGCTCGCTGCTGTCGAGCTTGTTGCAGGAAGAGAAAGTGCAATTGC CCAAATCCTCAGAACAATTCCCGACAAAGTCTACGGTCTCACATTCACCGTCGGGGACGCAAGAAATGGTTGCCATGGATCAATGATGGTCGAGGCATTC GCTGCTAAGGATACCTTCAAAGTTCCATTCGAATCCAAGGGAAAGGGTGAATTCAAGACCGTAAGTTTCAAGTTCAAAGCCGTTACAGCTCGGACAAGAA TTACGTTTTACAGTTCATACTACCATACTAGGATTGATGACTTCGGATCCCTCTGTGGTCCTATACTCGATGAAGTTAGGGTATTCCCTATTGCTTAG
AA sequence Show only first row Show all	>Potri.001G263900.2 pacid=42791377 polypeptide=Potri.001G263900.2.p locus=Potri.001G263900 ID=Potri.001G263900.2.v4.1 annot-version=v4.1 MAVGISLLLASFLLFTTSALAATYMEGFLKNGNFEEKPKPGAIKKTVLKGKYALPSWEINGFVEYISAGPQPGGMYFNVAHGVHAVRLGNEASISQTITI KAGSLYALTFGASRTCAQDEVLRVSVGTVFGDLPLQTLYSSNGGDTYAWGFKLNATVVKVSFRNTGVQEDPACGPLIDAVAIKELFPPMPTRDNLVKNHG FEEGPHRLVNTSSGVLLPPRQEDLTSPLPGWMIESLKAVKFIDKKHFNVPFGLAAVELVAGRESAIAQILRTIPDKVYGLTFTVGDARNGCHGSMMVEAF AAKDTFKVPFESKGKGEFKTVSFKFKAVTARTRITFYSSYYHTRIDDFGSLCGPILDEVRVFPIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	0	1
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	1.73	0.8795
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	1.73	0.8956
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.004G131500 [exp]	2.23	0.8769	I.2
AT3G08030			Protein of unknown function, D...		Potri.009G058800 [exp]	3.16	0.8502
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.003G139600 [exp]	4.35	0.8269
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	5.65	0.8788
AT3G05020		ACP1	acyl carrier protein 1 (.1)		Potri.013G031300 [exp]	6.70	0.8521
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.003G087600 [exp]	6.92	0.8354
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	7.21	0.8435
AT3G18050			unknown protein		Potri.015G040900 [exp]	8.00	0.8572

Compare expression of checked genes

Potri.001G263900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.