Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TOP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23890 1716 / 0 ATTOPII, TOPII topoisomerase II (.1.2) AT5G04130 115 / 5e-26 GYRB2 DNA GYRASE B2 (.1.2) AT3G10270 111 / 2e-24 GYRB1 DNA GYRASE B1 (.1) AT2G13720 72 / 2e-13 DNA topoisomerase (ATP-hydrolyzing)s;ATP binding;DNA binding (.1) AT3G10690 52 / 5e-06 GYRA DNA GYRASE A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G058900 [exp] 2498 / 0 AT3G23890 1691 / 0.0 topoisomerase II (.1.2) Potri.016G036200 [exp] 120 / 2e-27 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Potri.006G039400 [exp] 118 / 1e-26 AT5G04130 1025 / 0.0 DNA GYRASE B2 (.1.2) Potri.010G247000 [exp] 66 / 3e-10 AT3G10690 1366 / 0.0 DNA GYRASE A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019720 [exp] 1819 / 0 AT3G23890 1685 / 0.0 topoisomerase II (.1.2) Lus10016397 [exp] 1809 / 0 AT3G23890 1682 / 0.0 topoisomerase II (.1.2) Lus10010428 [exp] 117 / 1e-26 AT5G04130 1080 / 0.0 DNA GYRASE B2 (.1.2) Lus10012114 [exp] 89 / 2e-17 AT5G04130 1060 / 0.0 DNA GYRASE B2 (.1.2) Lus10028879 [exp] 62 / 4e-09 AT3G10690 1344 / 0.0 DNA GYRASE A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF00204 [poplar] [flax] DNA_gyraseB DNA gyrase B CL0329 [poplar] [flax] PF00521 [poplar] [flax] DNA_topoisoIV DNA gyrase/topoisomerase IV, subunit A CL0413 [poplar] [flax] Toprim-like PF01751 [poplar] [flax] Toprim Toprim domain CL0413 [poplar] [flax] PF16898 [poplar] [flax] TOPRIM_C C-terminal associated domain of TOPRIM
Representative CDS sequence Show only first row Show all	>Potri.001G264000.4 pacid=42790396 polypeptide=Potri.001G264000.4.p locus=Potri.001G264000 ID=Potri.001G264000.4.v4.1 annot-version=v4.1 ATGGCGGCAGCGACCAAGAAAGTCCCATTAGCAACAAGCAACAGCGTAAACATGAACCAGGGGAAGACAATCGAAGAAACTTACCAGAAAAAGTCCCAAT TGGAGCACATTCTTCTGCGACCCGACACCTACATCGGGTCAATCGAGAAGCACGCACAGACCCTCTGGGTTTACGAGGGTGACAAAATAGTGCACCGACC GGTCACCTATGTGCCAGGTCTTTACAAAATCTTTGATGAAATCTTGGTGAATGCAGCGGATAATAAGCAAAGAGACCCGAAAATGGACTCTTTGAAGGTC GTGATTGATGGGGAGAATAACCTGGTTAGTGTTTATAACAATGGAGATGGGGTTCCGGTGGAGATACACAAGGAGGAAGGTGTTTATGTGCCAGAATTGA TTTTTGGGCATTTGTTGACTAGTAGTAATTATGATGATGCTGAGAAGAAGACCACTGGCGGGAGAAACGGGTATGGTGCAAAGCTTACGAATATTTTTTC GACCGAGTTTGTGATTGAGACGGCTGATGGGAAAAGGCAAAAGAAGTATAAGCAGGTTTTCTCTAACAACATGGGGAAAAAATCTGAGCCAATGATAACT AAGTGCAAGGAGGGTGAGAATTGGACCAAGGTCACATTTAAGCCTGATTTGGCTAAGTTTAGCATGACTCATCTGGAAGAAGATGTGGTAGCTTTGATGA AGAAAAGGGTGGTTGACATAGCTGGTTGCCTTGGAAAGACTGTGAAGGTTGAGCTCAACGGAAGTCGTGTGCCTGTCAAATCATTTCAAGATTATGTTTA CATGTACTTGAATTCTGCCTCTGAACCTGGCTCAGAACGCCCTAAAAGTTTCTACGAGAAAGTTGGTGAGAGGTGGGAGGTTTGTGTGAGCCTCACGGAA GGTCAATTCCAGCAGGTCAGCTTCGTTAATAGCATTGCAACCATCAAGGGTGGGACTCATGTTGATTACGTCACTAATCAGATCACTAATTATGTGATGA ATGCTGTTAATAAGAAGCACAAGAATTCCAACATCAAAGCCCATAACGTGAAGAACTATTTGTGGGTTTTTGTCAATTGCCTTATTGATAACCCTGCTTT TGATTCTCAAACAAAGGAAACTTTGACACTTCGCCAGAGCAGTTTTGGATCGAAATGTGAACTTTCTGAAGACTTTTTGAAGAAAGTGGCAAAGTCTGAC ATCGTCGACAATCTCCTCTCGTGGGCCAAATTCAAGGAAAGCAAGGAGCTTAAGAAGACTGATGGAACGAAGACAGCGAAGGTTAATGTTCCGAAGCTCG AGGATGCTAACGAGGCTGGAGGGAGGTACTCTGAAAAATGTACGTTGATATTGACTGAAGGTGATTCAGCAAAAGCTCTGGCAATAGCTGGTGTGGCTGG GCTGACTCAGACGGAACGGAGTTTCTACGGTGTATTTCCTTTGAGAGGTAAATTGCTCAATGTGCGAGAAGCCACGCCTAAACAGCTCAAAGAGAATAAG GAAATTGAATGCATCAAGAAGATTCTTGGGTTGCAGCATCATAAGCAGTACAGTAATGTCAAGTCTTTGAGATACGGTCATCTGATGATAATGACAGACC AGGATCATGATGGGTCTCACATTAAAGGCCTGCTGATCAATTTCCTTCATTCATTCTGGCCATCATTACTGAAAGTCCCATCATTCTTGGTTGAGTTTAT AACTCCTATTGTCAAGGCAACTCATAGAAACGGAACAGTTCTATCGTTTTATTCCATGCCGGAGTATGAATCCTGGAAAGGAAGTTTGGCGGGAAATGCG AGTGGCTGGTCCATCAAATACTATAAGGGGTTGGGAACAAGTACATCCAAGGAAGGAAAAGCATACTTTCAAAGTCTTGACAAACACAAGAAAGACTTTA TATGGATGGATGAGCAAGATGGGGATGCAATAGAGCTTGCGTTTAGTAAAAAGAAGATCGAAGCAAGAAAGAATTGGCTTCGGCAGTACGAGCCTGGTAC TCACCTTGATCAGAACCAGAAGCTCATAAAGTACAGCGATTTCATTAACAAGGAGCTTATATTGTTTTCTATGGCGGATCTTCAAAGATCCATTCCTTCA ATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTTCTTTTAAGAGGAATTTTGTTAAAGAAGCGAAAATTTCCCAGTTTTCTGGTTATG TATCCGAGCATTCTGCTTATCATCATGGTGAGCAGAGTCTTGCCAGTACAATCATTGGAATGGCACAGGATTTTGTTGGCAGCAACAACATTAACCTTCT TCTGCCAAATGGTCAATTTGGCACCCGCAGTGTGGGAGGCAAAGACCATGCAAGTGCTAGGTACATTTATACTCAGCTCTCTCCTATTACGAGGTTCTTG TTCCCAAAGGATGATGATGGCCTTCTTGATTACTTGGATGAAGATGGGCAAACCATTGAACCTAATTGGTACATGCCAATTATTCCAATGGTCCTTGTGA ATGGTTGTGAAGGAATCGGCACTGGCTGGAGCACTTTCATCCCTAACTATAACCCAAGGGATATTGTTGCAAACATAAGGCGGTTATTGAATGGTGAAAT GATGGAGCCTATGAATCCATGGTATAGAGGTTTTAAAGGAACTATTGAAAAAGGTGCATCAAAGGAAGCTGGTTGTAGCTACACTGTTAATGGTGTCATA AATGAAGTCAATGAGACAACACTCAGGATAACTGAACTGCCCATCCGTCGGTGGACAGATGATTACAAGGCATTTTTGAATTCTGTTACAGAGGGGAATA GAGATGAAAATGGCAATTTACCAAAGGATCCCTTTATTAAGGATTTCAGAAAGTATGGTGATGATGCGACTGTAGTTTTTGAAGTTCTGTTGTCGGAAGA GAACATGATGATTGCAAAGCAAGAGGGTTTGCTAAAGAAATTTAAATTAACCACCACAATTAGCACAAGTAATATGCACCTCTTTGATTCAGCAGGGGTG ATTAAAAAATATGACAACCCAGAACAAATCCTTGAAGAATTTTTCCACTTAAGGCTTGAATACTACGAGAGAAGAAAGAAAGTTCTGCTGGAAAATCTGG AATTCGAGTTGTTGAAACTGGAAAACAAGGTCAGGTTTATCCTTGGAGTTGTGAGAGGTGAAATCATTGTGAACAACAGGAAGAGAGCCGATTTGTTCCT AGAGCTGCACCAGAAAGGTTTTACCCCCATTCCGAAGAAATCTAAGGCTGTTGTTGCTGGGGCAACGGATGATAAAGACGAAGCAGAAGACAGCCTTGAA GTTTCTGGGGTGCGGGCTAGTGACTATGACTATTTGCTGTCAATGGCAATTGGAACCTTGACACTAGAAAAGGTTCAGCAGCTATGTGCTGACCATGACA AACTCAATGGAGAGGTTGACAATTTAAGAAAGACAACTCCAATAGTTTTGTGGGTGAAAGATCTTGAGGCTCTTGAGATGCAACTTGATGTGCTGGATAA ATATGATGCTGAAGCAGAGGAGGCAAGAAAGAAATTAAAAGGTGATGCAAATGGCGAAGCTGGTTTTAAGGTTTCTAAACAAGCACCTAAAAATCCAAGG AAGTACACTAAGAAAGCCATAAATGAAGAAGTATCTGTTGAGACCATGGGAAAAGCATCCAGTTCTGCAATGGAAACAGGTCAGCAGGCAGAGAATGCTG CTGAGGTAGTGAAACCCAAAGGAAGGGCAGGATCAAGGAAGGCTCCTGCTAAAAAGCAGGAAAAACCCTCTCCAATTTCGGATGAGGATGATGAAATAGA ATCGTTGAAGGATCGACTTAAGGCATATAGACTTGATTCTTCGCCTGAGCAATCAGCTGACATGGAGACTGAAGTGCTTCGAGTACCAGCTGGGAGAAAC GCTGCTAGGAATAAGCCTCTAGCGGCTGTCTCAGTAATTTCTGATAGTGAGGACGAACCAGATCTTGACGATGACTTCGATGTACAAGTGAAAGCTGTCC CGGAAACAAAAAAGAAGGGGGGGAGAAAAGCTGCTGCTGCAAATGATAAGGCGGCCAAACCACCTGCAGCGACGAAGAGGAGAGGGCCAGCCAGCAAGCA GTCCCAGGGATTGGGCCAGCAGCTTCTAACTGAAATGTTGAAGCCTGCTGAAGAATCAGGAATATCTCCAGAAAAGAAAGTGAGGAAAATGAGGGCATCT CCATTCAACAAGAAGAGTGGTTCTTTATTGGGCGGAATTCACAAGGGAGATGATACTGGAATTGAAACAATGCCAGCTTCTACATCTGAAAACGCCGATG TCATCGACGTGCCAGCAAAAGCAAGGCCGCAGAGGGCAAACCGGAAGCAGACTACGTATGTCTTGAGTGACTCAGAGAGTGAAGATTCTGATTTTGAACA GGCTAGTGAAGATTCGGACTCCGACTAG
AA sequence Show only first row Show all	>Potri.001G264000.4 pacid=42790396 polypeptide=Potri.001G264000.4.p locus=Potri.001G264000 ID=Potri.001G264000.4.v4.1 annot-version=v4.1 MAAATKKVPLATSNSVNMNQGKTIEETYQKKSQLEHILLRPDTYIGSIEKHAQTLWVYEGDKIVHRPVTYVPGLYKIFDEILVNAADNKQRDPKMDSLKV VIDGENNLVSVYNNGDGVPVEIHKEEGVYVPELIFGHLLTSSNYDDAEKKTTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPMIT KCKEGENWTKVTFKPDLAKFSMTHLEEDVVALMKKRVVDIAGCLGKTVKVELNGSRVPVKSFQDYVYMYLNSASEPGSERPKSFYEKVGERWEVCVSLTE GQFQQVSFVNSIATIKGGTHVDYVTNQITNYVMNAVNKKHKNSNIKAHNVKNYLWVFVNCLIDNPAFDSQTKETLTLRQSSFGSKCELSEDFLKKVAKSD IVDNLLSWAKFKESKELKKTDGTKTAKVNVPKLEDANEAGGRYSEKCTLILTEGDSAKALAIAGVAGLTQTERSFYGVFPLRGKLLNVREATPKQLKENK EIECIKKILGLQHHKQYSNVKSLRYGHLMIMTDQDHDGSHIKGLLINFLHSFWPSLLKVPSFLVEFITPIVKATHRNGTVLSFYSMPEYESWKGSLAGNA SGWSIKYYKGLGTSTSKEGKAYFQSLDKHKKDFIWMDEQDGDAIELAFSKKKIEARKNWLRQYEPGTHLDQNQKLIKYSDFINKELILFSMADLQRSIPS MVDGLKPGQRKILFCSFKRNFVKEAKISQFSGYVSEHSAYHHGEQSLASTIIGMAQDFVGSNNINLLLPNGQFGTRSVGGKDHASARYIYTQLSPITRFL FPKDDDGLLDYLDEDGQTIEPNWYMPIIPMVLVNGCEGIGTGWSTFIPNYNPRDIVANIRRLLNGEMMEPMNPWYRGFKGTIEKGASKEAGCSYTVNGVI NEVNETTLRITELPIRRWTDDYKAFLNSVTEGNRDENGNLPKDPFIKDFRKYGDDATVVFEVLLSEENMMIAKQEGLLKKFKLTTTISTSNMHLFDSAGV IKKYDNPEQILEEFFHLRLEYYERRKKVLLENLEFELLKLENKVRFILGVVRGEIIVNNRKRADLFLELHQKGFTPIPKKSKAVVAGATDDKDEAEDSLE VSGVRASDYDYLLSMAIGTLTLEKVQQLCADHDKLNGEVDNLRKTTPIVLWVKDLEALEMQLDVLDKYDAEAEEARKKLKGDANGEAGFKVSKQAPKNPR KYTKKAINEEVSVETMGKASSSAMETGQQAENAAEVVKPKGRAGSRKAPAKKQEKPSPISDEDDEIESLKDRLKAYRLDSSPEQSADMETEVLRVPAGRN AARNKPLAAVSVISDSEDEPDLDDDFDVQVKAVPETKKKGGRKAAAANDKAAKPPAATKRRGPASKQSQGLGQQLLTEMLKPAEESGISPEKKVRKMRAS PFNKKSGSLLGGIHKGDDTGIETMPASTSENADVIDVPAKARPQRANRKQTTYVLSDSESEDSDFEQASEDSDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.001G264000 [exp]	0	1	TOP2.2
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	1.41	0.9645
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Potri.009G058900 [exp]	2.64	0.9660	TOP2.3
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	2.82	0.9589
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	4.24	0.9609
AT2G36200			P-loop containing nucleoside t...		Potri.016G077800 [exp]	5.65	0.9520
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	5.74	0.9503
AT3G19050		POK2	phragmoplast orienting kinesin...		Potri.004G145800 [exp]	5.91	0.9559
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.019G129900 [exp]	6.48	0.9446	Pt-SOM1.1,CHR905
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	7.14	0.9416
AT3G27350			unknown protein		Potri.001G336300 [exp]	7.34	0.9568

Compare expression of checked genes

Potri.001G264000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.