Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27310 237 / 2e-78 PUX1 plant UBX domain-containing protein 1 (.1) AT2G01650 48 / 3e-06 PUX2 plant UBX domain-containing protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059300 [exp] 306 / 6e-106 AT3G27310 209 / 9e-68 plant UBX domain-containing protein 1 (.1) Potri.001G337533 [exp] 150 / 5e-45 AT3G27310 120 / 1e-33 plant UBX domain-containing protein 1 (.1) Potri.008G133700 [exp] 52 / 1e-07 AT2G01650 497 / 4e-174 plant UBX domain-containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032080 [exp] 271 / 9e-92 AT3G27310 302 / 3e-104 plant UBX domain-containing protein 1 (.1) Lus10014616 [exp] 270 / 2e-91 AT3G27310 296 / 1e-101 plant UBX domain-containing protein 1 (.1) Lus10034612 [exp] 41 / 0.0006 AT2G01650 541 / 0.0 plant UBX domain-containing protein 2 (.1) Lus10021798 [exp] 41 / 0.0006 AT2G01650 532 / 0.0 plant UBX domain-containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain
Representative CDS sequence Show only first row Show all	>Potri.001G264500.3 pacid=42790870 polypeptide=Potri.001G264500.3.p locus=Potri.001G264500 ID=Potri.001G264500.3.v4.1 annot-version=v4.1 ATGATTGTGGATGGTTCTTCCCCTTTGCATCTAAAGAGAAGAAGATTTGCCACTGCTGATACCATGGAAGCTGAAGCAGCTAAGGCCAAGTTTGCAGCTG TTAAAGAGAAGTTTGGGCGTGATATCCGTGTGTTTGAAACATCGGGAGTCTCTTCATCACCGACTCAAGTGTCCAATGATGATGAGAGGGATGATTTTTA TGAGTTCACTGCTGAGGATTATTATAGAATGCTGGCTACAAAGAAGGCCGATAAATATTTAAAGACGAAAAAGATTCGAGAAGCGGAAGTTGCTGCTCAC AGGTCAAGAATAACCAAGACTACAATCAGGGTTCGTTTTCCTGATAATCATACATTGGAGGTGGTATTTCATCCATCTGAAAAGATTCAGAGCTTATATG ATCTTCTCTCTAGAATGGTTGCTCAACCAGAAGTACCCTTTTATGTTTACACTACTCCTCCAAAGAAGCAAATCAAAGACATGTCACAGGATTTTTACTC TGCTGGTCTTATTCCTGGTGCAATCGTTTATTTTTCATATGATATGCCAAATCAGGTGGATAATGAAGCTGTCAATTCTGGTCCCTTCCTCCAAGAAGAG GTTATGTCTTTGAAAGGTTTGGATGTTATGCCAGAGCCAGTAGAGCCGATCCATACCACTCCAGAACCTGTGACAACAGCTCCTCCTCCAGTTCCACAAG AGCCCAAGGCTGCTGGGAAAAAACCTGTCAAGCCAAAGTGGCTTAAAATGTGA
AA sequence Show only first row Show all	>Potri.001G264500.3 pacid=42790870 polypeptide=Potri.001G264500.3.p locus=Potri.001G264500 ID=Potri.001G264500.3.v4.1 annot-version=v4.1 MIVDGSSPLHLKRRRFATADTMEAEAAKAKFAAVKEKFGRDIRVFETSGVSSSPTQVSNDDERDDFYEFTAEDYYRMLATKKADKYLKTKKIREAEVAAH RSRITKTTIRVRFPDNHTLEVVFHPSEKIQSLYDLLSRMVAQPEVPFYVYTTPPKKQIKDMSQDFYSAGLIPGAIVYFSYDMPNQVDNEAVNSGPFLQEE VMSLKGLDVMPEPVEPIHTTPEPVTTAPPPVPQEPKAAGKKPVKPKWLKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	0	1
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	1.41	0.7314
AT1G18490			Protein of unknown function (D...		Potri.012G057400 [exp]	3.46	0.6669
AT3G48330		ATPIMT1, PIMT1	Arabidopsis thaliana protein-l...		Potri.015G086600 [exp]	4.24	0.6900
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.012G127300 [exp]	5.00	0.6527
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	12.48	0.6223
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	14.49	0.6116
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.014G153800 [exp]	17.08	0.6558
AT3G08890			Protein of unknown function, D...		Potri.006G104000 [exp]	17.88	0.6388
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Potri.004G092900 [exp]	18.76	0.5963
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Potri.008G062100 [exp]	19.18	0.5957

Compare expression of checked genes

Potri.001G264500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.