Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52080 710 / 0 CHX28 cation/hydrogen exchanger 28 (.1) AT2G13620 306 / 7e-92 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G05580 231 / 2e-64 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G17630 225 / 9e-63 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 220 / 1e-60 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT4G23700 202 / 1e-54 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT2G31910 200 / 6e-54 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT1G16380 184 / 2e-48 ATCHX1 CATION EXCHANGER 1, Cation/hydrogen exchanger family protein (.1) AT3G53720 180 / 5e-47 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G79400 177 / 2e-46 ATCHX2 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059400 [exp] 1172 / 0 AT3G52080 803 / 0.0 cation/hydrogen exchanger 28 (.1) Potri.007G105200 [exp] 278 / 2e-81 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 250 / 1e-71 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 250 / 2e-71 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 250 / 3e-71 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 248 / 1e-70 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.003G194200 [exp] 231 / 6e-65 AT1G79400 625 / 0.0 cation/H+ exchanger 2, cation/H+ exchanger 2, cation/H+ exchanger 2 (.1) Potri.003G134900 [exp] 231 / 1e-64 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.004G131300 [exp] 226 / 1e-62 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016403 [exp] 911 / 0 AT3G52080 856 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10019716 [exp] 909 / 0 AT3G52080 857 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10029506 [exp] 889 / 0 AT3G52080 850 / 0.0 cation/hydrogen exchanger 28 (.1) Lus10035312 [exp] 275 / 5e-80 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 272 / 5e-79 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10040881 [exp] 234 / 2e-65 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 233 / 6e-65 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 232 / 8e-65 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 230 / 4e-64 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10017541 [exp] 218 / 2e-59 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.001G264600.2 pacid=42793491 polypeptide=Potri.001G264504.1.p locus=Potri.001G264600 ID=Potri.001G264600.2.v4.1 annot-version=v4.1 ATGGACCGTGTTCGTGCCATTAATGGCACAGATCCAGATTGCCCTGGTTTCATTTCATATGCGGTAAAAAATGTGGCAGGAAAGGTAATTTCCATCGGTC TGGCTTTTGTTTTTAGCAATCTCTTACACCAACTTCTAAAGCCTCTATCCCAACCACGCATAGTTTCTGATATTGTTGTAGGGCTGGTTCTTGGCAACAT AGGTGTGATACGCCGAGCTTTCGACGAGCAGTTTATTGCAATACTAAATTCTATTGCTGAGTTTGGTATGATGTGTTACATGTTTGTGCTGGGGATGGAA ATGGACCCATATGTAATCTTTAAAGGACCAACAAGAAATGCTCTGGTAGCCTATGCTGGAATGGTGTCCACATCCGTTTTGGTTTGCAGCATAATCCCAT TTATGAACTATTATAAACACCCGAGCATTGGCTTCACCCTTTCCCTCTCTATCAGCCTCTCTGGCAGTGCCTCCCATATACTAACTCGCCTTATAACTAG TCTCAAGATAGGCAAGTCAGATATAGGAAAAATTGTGATTGCAGCAGGAGTGCACTCTGACATGATATCCATGCTTCTCATCTCTATTGGATATCCTTTC CTTCAACTCACAGTCACAGTTACCGATATTGCTGCAAGCGTTAGAATGACCTTGATTATGGCTGCTGCATTGCTGCTCCAGATACTTTTCACTGCCACAG TTTCACCTATCTTTATGAACTGGGTCAACAACGAAAACCCTGAAGGGAAACCCATGAAAGGTTCCCATTTGGTGCTTTCCGTTGCCTTCATGGCTTTTGC TTGCAGTGTCGCCCCGATTTATGGATACAGTCCCATTCTCAGTGCATTCGTGGCTGGAGTTTTCATACCAAGTAAGGGGAGAGTATCAAAATGGGCAATT GGCAAAATCAACTTCCTGTTACCTACCATTTTCTACCCAGTGTTCTTCTTTTGGATGGGGTATCATGCTAATATCAGTAAATTTGAAGCTGGCAAAAGGG AAACATGGCTGAGGTTTTTTGTCCTTGCAGTCATTACAATATATATTTGGCAAAGTTTTCATCGGCGTGAATCTGCAGAACTCGGTTTCCTTCTAACTGC AAAGGGCCACTTTCATGTATTTCTGGCGGTTGTTGCAAGCCTGTTAGGTATTACAACTATTTCAACTTGCATTTCAATCATTATTGTGATCTTCCTTTCG GTAGTACACACCCCAACAGTTGTGTCAAAAATCATCAAACGTGCGAGGAAACTTGCACCAACTCAACGAATGGCTCTTCAGTGGCTCGACCCCTCAAGTG AGCTTCGAATCTTGCTGTGTCTTCATGATGTGCATAACGTGCATTCAACCATCAACTTCATGGAGATTTCTCGAGGGGCATCTGATCCAGGAATTCTGGT TTATCTTACTGACATGGTTGAACTCACAGATCAAATAGCTTCTACACTGGTTCAAGAAGGAAGGGATACTGTGACTGTGACTGACAAGGATGTAACCCAG ATGAGAGATCAGATCACTACTGCAGTCCAGGCTTATGTGGAGGAAAATGGTGATGGTATCACTCTCAAACGAATGCTTGCTCTCTCAAAATTCAATGGCA TGGCCAAAGATATCTGCAATTTAGCAGAGGACTTGATGATCTCCCTCGTCATATTGCCATTTCACAAGAACCAGTGTGCAAATGGGACGTTGGATGGGGG TAATCCTGGTTTCCGGCATGTGAACCGTAAGCTAGGAACTGACTCGTGCTCCGGAATGCCCATGTTCAGTGGGGATTCTGTGGACCGAGGTTATGGATTG GTAGAGGAAATATCAAGGTCGGTAAGATCTTTCCAGGTAGCAGTCATCTTCTTTGGTGGCAAAGATGACAGAGAAGCACTAGCATATGCAGGTCGTGTTG CTCGACATCCCGGGGTAAAACTCACAGTGATAAGATTCCTACTTGATAGTGATTCAGAGAACGCCTCTAGAAGAGATGTGAATTATAGGATAAATGCTGC TGAGCAGGAAGAAGAGATGAAGCTGGACGATGAGTGTTTTGCTCAATTCTATGAGAGACACATCGCCGGGGGACATGTTTCCTATAATGAAAAGCATGTT GCCAATTCAGCCGAGACCTATGCTACTCTGAGATCATTGGAACCGTATGGGCTAATAATAGTAGGGCGAGGTGGGAGGGTGAACTCGATATTGACTATAG GGATGAATGATTGGCAGCAGTGGCCGGAATTAGGCCCAATAGGGGATGTTCTTTCAGGGTCTGATTCCTCGCACGCAACCTCTGTTTTGATCATCCAACA ACACAGTCTCAAGGGAGAATTAGATGGCGTGGATGATGAATTTTCCATAATGTAA
AA sequence Show only first row Show all	>Potri.001G264600.2 pacid=42793491 polypeptide=Potri.001G264504.1.p locus=Potri.001G264600 ID=Potri.001G264600.2.v4.1 annot-version=v4.1 MDRVRAINGTDPDCPGFISYAVKNVAGKVISIGLAFVFSNLLHQLLKPLSQPRIVSDIVVGLVLGNIGVIRRAFDEQFIAILNSIAEFGMMCYMFVLGME MDPYVIFKGPTRNALVAYAGMVSTSVLVCSIIPFMNYYKHPSIGFTLSLSISLSGSASHILTRLITSLKIGKSDIGKIVIAAGVHSDMISMLLISIGYPF LQLTVTVTDIAASVRMTLIMAAALLLQILFTATVSPIFMNWVNNENPEGKPMKGSHLVLSVAFMAFACSVAPIYGYSPILSAFVAGVFIPSKGRVSKWAI GKINFLLPTIFYPVFFFWMGYHANISKFEAGKRETWLRFFVLAVITIYIWQSFHRRESAELGFLLTAKGHFHVFLAVVASLLGITTISTCISIIIVIFLS VVHTPTVVSKIIKRARKLAPTQRMALQWLDPSSELRILLCLHDVHNVHSTINFMEISRGASDPGILVYLTDMVELTDQIASTLVQEGRDTVTVTDKDVTQ MRDQITTAVQAYVEENGDGITLKRMLALSKFNGMAKDICNLAEDLMISLVILPFHKNQCANGTLDGGNPGFRHVNRKLGTDSCSGMPMFSGDSVDRGYGL VEEISRSVRSFQVAVIFFGGKDDREALAYAGRVARHPGVKLTVIRFLLDSDSENASRRDVNYRINAAEQEEEMKLDDECFAQFYERHIAGGHVSYNEKHV ANSAETYATLRSLEPYGLIIVGRGGRVNSILTIGMNDWQQWPELGPIGDVLSGSDSSHATSVLIIQQHSLKGELDGVDDEFSIM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.001G264600 [exp]	0	1
					Potri.001G302201 [exp]	22.24	0.7599
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G370100 [exp]	31.74	0.7417	Pt-OPT1.1
					Potri.001G422000 [exp]	35.67	0.7021
					Potri.010G095050 [exp]	53.21	0.7080
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G171200 [exp]	63.87	0.5925
					Potri.003G214400 [exp]	68.89	0.6685
AT4G14096			F-box/RNI-like superfamily pro...		Potri.013G151700 [exp]	75.63	0.6393
AT1G78610		MSL6	mechanosensitive channel of sm...		Potri.004G178900 [exp]	88.14	0.6820
					Potri.001G021801 [exp]	88.94	0.6896
AT4G16580			Protein phosphatase 2C family ...		Potri.001G089201 [exp]	121.95	0.6522

Compare expression of checked genes

Potri.001G264600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.