Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63510 607 / 0 FMN-linked oxidoreductases superfamily protein (.1.2) AT5G47970 581 / 0 Aldolase-type TIM barrel family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G059900 [exp] 721 / 0 AT3G63510 591 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019714 [exp] 682 / 0 AT3G63510 596 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10029508 [exp] 670 / 0 AT3G63510 618 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016405 [exp] 662 / 0 AT3G63510 575 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10039605 [exp] 635 / 0 AT3G63510 619 / 0.0 FMN-linked oxidoreductases superfamily protein (.1.2) Lus10016407 [exp] 422 / 6e-148 AT3G63510 374 / 6e-130 FMN-linked oxidoreductases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [poplar] [flax] TIM_barrel PF01207 [poplar] [flax] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Potri.001G264900.1 pacid=42788741 polypeptide=Potri.001G264900.1.p locus=Potri.001G264900 ID=Potri.001G264900.1.v4.1 annot-version=v4.1 ATGGTGAAGTTTTCTGGGTATTCTTTGATTTCTTCATTTACTCCTTTTCATTCTGTTATTCTCAAAAAACAGCGCAGATTTTCAGCATTAGATTTATATA GCAACAATTCAACCAAGTCAAGAAGAACGCTTTCTGTTTTTGCTAATAAACATCAATTACGTAATATAAAAACTCACACCGAGATGGGTGTCGAACAATA TCGTCCTCCTCTATTTAGTGTTGCTCCAATGATGGACTGGACCGATAATCATTATAGGACTGTTGCACGGATAATATCAAAACATGCATGGCTTTATACG GAGATGCTTGCTGCTGAAACAATTGTCCATCAACAAGGAGATTTGGACAGATTTTTGGCATTTTCTCCGGAACAGCATCCAATTGTGTTGCAAATTGGTG GGAATAATTTGGACAACATCGCAAAAGCAACTCGACTTGCCAATTCTTATGGATATGATGAAATTAACTTGAATTGTGGTTGTCCTAGTCCCAAGGTAGC TGGACATGGGTGCTTTGGCGTCCGTCTTATGCTTGATCCAAAGTTTGTCGGTGAAGCTATGTCAGTTATTGCTGCCAACACAGATGTCCCTGTTAGTGTT AAGTGCCGGATTGGTTTAGACGATCATGATTCTTATAATGAGCTCTGTGATTTTATCTATAAGGTTTCTTCTCTATCTCCGACTAAGCATTTTATTATAC ATTCACGGAAGGCTTTGCTCAATGGCATTAGCCCAGCTGACAATCGAAGGATTCCTCCCCTCAAATATGAGTACTATTACGCCCTCTTACGGGATTTTCC TGACTTAAGATTTACAATAAATGGAGGCATAAATTGTGTTGATGAGGTAAATGCAGCATTAAGAGAAGGTGCACATGGTGTAATGGTTGGGCGTGCTGCC TACAATTACCTCTGGAATACTCTGGCACATGTTGATACTGCAATTTATGGTGCACCAAGCAGTGGTCTTACACGTCGTCAGGTCCTTGAACAATATCAAG TATACGGGGATGCTGTTCTGGGAACATATGGGAATAGTAGACCTAATATACGGGATCTGATAAAGCCTTTATTTGGTTTTTTCTATTCCGAGCCTGGAAA CAATTTGTGGAAGCGCAAAGCTGATGCTGCTTTCCAGATGAAGAATATCACGACAGTGAAATCCTTTTTCGAGGAAACCCTAGTAGCGATTCCTGATGCT GTCTTGGATTCACATGCTGCGGAGCTACCATCTGGTCGTAAAGATCTTTTTGCTAATGTACGGGGATTGCTTCCACCACCGTATGAAACCAGAGAACAGG AGGTAGTAGTATATGCTTAG
AA sequence Show only first row Show all	>Potri.001G264900.1 pacid=42788741 polypeptide=Potri.001G264900.1.p locus=Potri.001G264900 ID=Potri.001G264900.1.v4.1 annot-version=v4.1 MVKFSGYSLISSFTPFHSVILKKQRRFSALDLYSNNSTKSRRTLSVFANKHQLRNIKTHTEMGVEQYRPPLFSVAPMMDWTDNHYRTVARIISKHAWLYT EMLAAETIVHQQGDLDRFLAFSPEQHPIVLQIGGNNLDNIAKATRLANSYGYDEINLNCGCPSPKVAGHGCFGVRLMLDPKFVGEAMSVIAANTDVPVSV KCRIGLDDHDSYNELCDFIYKVSSLSPTKHFIIHSRKALLNGISPADNRRIPPLKYEYYYALLRDFPDLRFTINGGINCVDEVNAALREGAHGVMVGRAA YNYLWNTLAHVDTAIYGAPSSGLTRRQVLEQYQVYGDAVLGTYGNSRPNIRDLIKPLFGFFYSEPGNNLWKRKADAAFQMKNITTVKSFFEETLVAIPDA VLDSHAAELPSGRKDLFANVRGLLPPPYETREQEVVVYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63510			FMN-linked oxidoreductases sup...		Potri.001G264900 [exp]	0	1
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Potri.003G031800 [exp]	1.73	0.9600
AT3G19800			Protein of unknown function (D...		Potri.005G094700 [exp]	3.16	0.9396
AT5G19500			Tryptophan/tyrosine permease (...		Potri.001G224950 [exp]	3.74	0.9512
AT5G09820			Plastid-lipid associated prote...		Potri.001G309300 [exp]	4.89	0.9382
AT1G72640			NAD(P)-binding Rossmann-fold s...		Potri.003G063800 [exp]	9.48	0.9475
AT1G31190		IMPL1	myo-inositol monophosphatase l...		Potri.012G120492 [exp]	11.66	0.9439
AT5G16810			Protein kinase superfamily pro...		Potri.019G050500 [exp]	12.16	0.9180
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.001G351400 [exp]	15.19	0.9330
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Potri.001G279100 [exp]	16.88	0.9285	F2KP.3
AT2G35500		SKL2	shikimate kinase-like 2, shiki...		Potri.003G096600 [exp]	17.20	0.9354

Compare expression of checked genes

Potri.001G264900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.