Plant FIBer expression Database

Potri.001G265000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G265000.1 pacid=42790815 polypeptide=Potri.001G265000.1.p locus=Potri.001G265000 ID=Potri.001G265000.1.v4.1 annot-version=v4.1
ATGGCCTCAATCACCATGGCTGCCTCGTTTCTCAGCAGCTCCGCCCTCACAAGCCAGTCTCTGGCAACTGCCACCGGGAGACTTGTGGTGGCAAGTGCTG
CTAGAGGAAATGAAGTGGAAAAGGTGAAGTGGAATCATGACATAAAAAAAGACGGCGGCTATGGGAGGAGGGATGTGATGTTTGCTGCAGCAGCAGCTGC
TGTCTGCTCAGTTGCTGGGATTGCGGTAGCTGAGGGGCCAAAGCCAGGTACCCCAGAAGCCAACAGCTAG
AA sequence
>Potri.001G265000.1 pacid=42790815 polypeptide=Potri.001G265000.1.p locus=Potri.001G265000 ID=Potri.001G265000.1.v4.1 annot-version=v4.1
MASITMAASFLSSSALTSQSLATATGRLVVASAARGNEVEKVKWNHDIKKDGGYGRRDVMFAAAAAAVCSVAGIAVAEGPKPGTPEANS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G265000
[exp]
0 1
AT2G19080 metaxin-related (.1) Potri.018G147625
[exp]
1.41 0.8731
AT5G43960 Nuclear transport factor 2 (NT... Potri.014G192900
[exp]
9.16 0.8543
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Potri.018G011300
[exp]
10.00 0.8349
AT5G38730 Tetratricopeptide repeat (TPR)... Potri.017G108600
[exp]
10.48 0.8128
AT3G14930 HEME1 Uroporphyrinogen decarboxylase... Potri.011G109800
[exp]
10.58 0.8251
AT2G20710 Tetratricopeptide repeat (TPR)... Potri.013G133000
[exp]
11.83 0.8253
AT3G11340 UGT76B1 UDP-dependent glycosyltransfer... Potri.010G195300
[exp]
15.49 0.7828
AT3G04130 Tetratricopeptide repeat (TPR)... Potri.008G179201
[exp]
15.49 0.7996
AT5G05550 Trihelix sequence-specific DNA binding ... Potri.008G071300
[exp]
17.14 0.8028
AT5G01850 Protein kinase superfamily pro... Potri.016G134900
[exp]
19.18 0.7965

Potri.001G265000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.