Plant FIBer expression Database

Potri.001G265100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G47940 290 / 5e-86 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G060000
[exp]
979 / 0 AT5G47940 228 / 6e-65 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016408
[exp]
547 / 0 AT5G47940 224 / 6e-62 unknown protein
Lus10019713
[exp]
545 / 0 AT5G47940 227 / 4e-63 unknown protein
Lus10016406
[exp]
199 / 1e-58 AT5G47940 106 / 1e-26 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G265100.2 pacid=42792788 polypeptide=Potri.001G265100.2.p locus=Potri.001G265100 ID=Potri.001G265100.2.v4.1 annot-version=v4.1
ATGGAATCGTCACAGAACCACGACACTTCATGGACCGCCGCTACTAACTGGACCATCGCCGGTGGCTCTCTCGTCGATTCACTCGCGTTCGAGTCCTCTC
TTTCCCTTATCACCCACGACGATAATAATGATCAGGGTCAATCCTCCACCGTCGATTCTAAATCGAAATCTCCTCTTATCCTCTACGCTCCTGCACCCGA
TTCCGCTCCCTGCGAGATCACTATAAATTTTGCACAAAAACATGAAGTGAGGCAGGTTTATGTTCGAAGTACTGCTCGAGTTTATGAAATATACTGTGCC
CCTGAGCAGCAGAGCAGCACTGAGTATCTGTGTACTGTTCGTTGTGGCATAGCTGCTAGAGACGAAGATGTGCTGCATGCTACCAATGTTGAAGAAGCTG
TTTTGGCACATGCAAGTTCTATTCAAGAATCAGCTGAAGAGAAACTCAGAAATGGTAGTAGCCTATCCCCCAATGAAGATGACTGGATTGAAGTGAAAGC
TCTTGATAGTCCCCTGCTCATCAACAGAAACAGTTCATCATCAAATTCTGATATAAAGCCAGAAAGAAACTCGCAGAACTTTCAGGATTTTTATGAAGCT
ACAGCAGAGATCACTGATGCAAACCCTTCCACTTCCCTTACACTCAGGCTGCTTTCGCTTCAGAATAAAGGTTATGTTTGTGTTGATGAAGTTTATGTAT
TTGGTGATCCTGCTGATGCAAGTAATTCGGATAATCAAGTGGGTCCAAAGGAGAACTCTGCTGGAAATTCACTTATGGCCATGCTCGTACCTGCCTTTTT
TCAGTTGTCTAAAACAAAGGGTATTGGTGGAGGAGAAGATAAATGCAATATTGATACAAGGGAAAGACAGAATTCTCAGGACAATGGGTCAAAAGCAGCT
GCTCCTGTTGATGTTGAGAAGAAAATTCAGGAGGAAGTGAGGTTGCAAGAAGCAGCTGGGCCTACTTCCAAACCTGTCCAGCATGAGATCTCCCAACAAG
TTTCAAATACAGAGAGCAAGCCTAATATTTCACACAATCATTTTGAAGGTGTCCTGGACCAGCTTGTTTCTCGAGTTAACAGAATAGAGGATCTCTTTTT
GAGGTTTGAGGAAAGTATGCTGAAGCCCATTAACAGCATTGATTTGAGGCTCCAGCGAGTCGAGCAGCAACTTGATGTGCTCACAAAGAAAACTGAGAGC
TCTGCATTGGTTTCTTGCACAAGAATATCTGCTCCTGATTTTTCATGCAGTGAACCAGAGACCAACTCGTATAACAGTAGTAGTGATATCAGTTATGTGG
CATGTGAAGAAAATAGGAGCCACTCACCTTCTCCTCTGACATCTGTTCTCCCTGATGCCACCCCTGTTTCTGTAAATGACACAATGTTACAACCTGGTCT
GGTAGTTACTGCTCCTGAGTTCTCAAATTATGATGGTGAGGAAGAAGATCATGCGGTGGAATCAGTGAAGGAATCTCCAAAGGATAAACAAAAGCATACT
ATGTCAATTGATGATGCTTTAGCATATGCACTTGCTGGATTCTTATCTTCAACTTCAATCCAGTCCCAGAAATATTCTCAAACTCTTGTAGTTAAGACTC
CTGATTTTACAAGCGAAGAAGAAAACATCATTGAGAATGTGACTCCACGAATAGTTGAATCTGAACGAAATATGGACCCTCCCACTTGTTTTTGTGAATC
TGATGGGACAGAGCACTTGGGAAATTCACTTTCATCTGTATCAAATATTACTTCTTTAGAGGGCGATGAGAATGTGATGAGATCTCTTAGTGATAACAAC
TCTTCAAAAATGGTTAACGGGGTTGATGAGCAATGCCATCGTAGTGAGGGGGGAGAAAGTGATTCACAGGACATCTGTGTTGGCCATGCAGTTGCACCAG
CCACGCATGATGTGGTGGGCACGGATTCATATCACCTGGAAAACGACATAAAGGATGGGGAAATTGACAATAAAATAAGCAAAACTCCTGATCTTCAGAA
AACCGAGAGTCTGAAACAGTTTTCTAAAGATCAGACTGATGATGGCTCTGTTACTACCCAGGAAATAGCTGTTTCAAATGAATTAGTCGCTTCCAAAGGC
ACAGAAGAAGAATCTAAACAAGACATTCTGCAGAACATTGTTGAACTGTCACGGGCTTCTTCTGTAGTAGATTTTGAATCTCCAATCCTGGAAGTGAAAT
TTGTTTCCCAACAAAACTCAGGTATCAAGTCTCCCCTTGAAGCCCTTTTGGCTGGCATGCCTGATCTGGAAGTTGAAATTCCATCAGTTATGGAAGACAA
TAATGATGGGTCTAAAAATGGCGAACAGTGCAGCTTAATTTCAGTTGAGGATTTTGGAGCAGAAGGTTCTGGAACTGATACCCACATTTCAGTGGATATG
GATTATTACAGTCTTAATGAGACGCCTTCAAATATCGAAGCTGATAAACTATACGACTGTCATACAAGCAGCAGCCAGGAAATGCCAGCTGTAAGTCTGA
TATGA
AA sequence
>Potri.001G265100.2 pacid=42792788 polypeptide=Potri.001G265100.2.p locus=Potri.001G265100 ID=Potri.001G265100.2.v4.1 annot-version=v4.1
MESSQNHDTSWTAATNWTIAGGSLVDSLAFESSLSLITHDDNNDQGQSSTVDSKSKSPLILYAPAPDSAPCEITINFAQKHEVRQVYVRSTARVYEIYCA
PEQQSSTEYLCTVRCGIAARDEDVLHATNVEEAVLAHASSIQESAEEKLRNGSSLSPNEDDWIEVKALDSPLLINRNSSSSNSDIKPERNSQNFQDFYEA
TAEITDANPSTSLTLRLLSLQNKGYVCVDEVYVFGDPADASNSDNQVGPKENSAGNSLMAMLVPAFFQLSKTKGIGGGEDKCNIDTRERQNSQDNGSKAA
APVDVEKKIQEEVRLQEAAGPTSKPVQHEISQQVSNTESKPNISHNHFEGVLDQLVSRVNRIEDLFLRFEESMLKPINSIDLRLQRVEQQLDVLTKKTES
SALVSCTRISAPDFSCSEPETNSYNSSSDISYVACEENRSHSPSPLTSVLPDATPVSVNDTMLQPGLVVTAPEFSNYDGEEEDHAVESVKESPKDKQKHT
MSIDDALAYALAGFLSSTSIQSQKYSQTLVVKTPDFTSEEENIIENVTPRIVESERNMDPPTCFCESDGTEHLGNSLSSVSNITSLEGDENVMRSLSDNN
SSKMVNGVDEQCHRSEGGESDSQDICVGHAVAPATHDVVGTDSYHLENDIKDGEIDNKISKTPDLQKTESLKQFSKDQTDDGSVTTQEIAVSNELVASKG
TEEESKQDILQNIVELSRASSVVDFESPILEVKFVSQQNSGIKSPLEALLAGMPDLEVEIPSVMEDNNDGSKNGEQCSLISVEDFGAEGSGTDTHISVDM
DYYSLNETPSNIEADKLYDCHTSSSQEMPAVSLI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G47940 unknown protein Potri.001G265100
[exp]
0 1
AT3G45630 RNA binding (RRM/RBD/RNP motif... Potri.009G026200
[exp]
2.23 0.7525
AT2G43410 FPA RNA binding (.1.2.3.4) Potri.007G131100
[exp]
3.46 0.6699
AT1G08620 PKDM7D Transcription factor jumonji (... Potri.013G046700
[exp]
6.32 0.7204
AT2G40980 Protein kinase superfamily pro... Potri.010G173100
[exp]
13.26 0.6146
AT4G24470 GATA GATA25, TIFY1, ... Zinc-finger protein expressed ... Potri.002G110900
[exp]
17.54 0.6400 ZIM.2
AT2G43410 FPA RNA binding (.1.2.3.4) Potri.017G026600
[exp]
23.76 0.6452
AT4G32010 B3 HSL1, HSI2-L1, ... VP1/ABI3-LIKE 2, HSI2-like 1 (... Potri.006G108300
[exp]
24.08 0.6471
AT5G55060 unknown protein Potri.011G089300
[exp]
27.92 0.6357
AT2G23140 RING/U-box superfamily protein... Potri.007G051000
[exp]
31.46 0.5824
AT4G39140 RING/U-box superfamily protein... Potri.004G158400
[exp]
32.75 0.6041

Potri.001G265100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.