Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARP7.1,ARP903
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60830 611 / 0 ATARP7 actin-related protein 7 (.1) AT5G09810 221 / 6e-69 ACT2/7, ACT7 actin 7 (.1) AT3G53750 219 / 4e-68 ACT3 actin 3 (.1) AT2G37620 219 / 4e-68 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT3G12110 217 / 2e-67 ACT11 actin-11 (.1) AT3G18780 216 / 5e-67 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2) AT1G49240 216 / 5e-67 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT5G59370 213 / 5e-66 ACT4 actin 4 (.1.2) AT3G46520 213 / 6e-66 ACT12 actin-12 (.1) AT2G42100 196 / 2e-59 Actin-like ATPase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G060200 [exp] 705 / 0 AT3G60830 615 / 0.0 actin-related protein 7 (.1) Potri.011G148000 [exp] 228 / 8e-72 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G309500 [exp] 224 / 3e-70 AT5G09810 775 / 0.0 actin 7 (.1) Potri.019G010400 [exp] 224 / 3e-70 AT5G09810 774 / 0.0 actin 7 (.1) Potri.006G192700 [exp] 219 / 2e-68 AT3G12110 767 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 219 / 2e-68 AT3G12110 767 / 0.0 actin-11 (.1) Potri.010G204300 [exp] 219 / 3e-68 AT3G12110 733 / 0.0 actin-11 (.1) Potri.008G055500 [exp] 219 / 4e-68 AT3G12110 765 / 0.0 actin-11 (.1) Potri.001G453600 [exp] 218 / 8e-68 AT5G09810 769 / 0.0 actin 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039606 [exp] 631 / 0 AT3G60830 602 / 0.0 actin-related protein 7 (.1) Lus10029510 [exp] 616 / 0 AT3G60830 587 / 0.0 actin-related protein 7 (.1) Lus10005819 [exp] 221 / 4e-69 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 221 / 4e-69 AT5G09810 778 / 0.0 actin 7 (.1) Lus10006783 [exp] 221 / 4e-69 AT5G09810 778 / 0.0 actin 7 (.1) Lus10016558 [exp] 220 / 2e-68 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 220 / 2e-68 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 220 / 2e-68 AT3G12110 768 / 0.0 actin-11 (.1) Lus10001694 [exp] 219 / 4e-68 AT3G12110 766 / 0.0 actin-11 (.1) Lus10005163 [exp] 219 / 4e-68 AT3G12110 766 / 0.0 actin-11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [poplar] [flax] Actin_ATPase PF00022 [poplar] [flax] Actin Actin
Representative CDS sequence Show only first row Show all	>Potri.001G265200.1 pacid=42792177 polypeptide=Potri.001G265200.1.p locus=Potri.001G265200 ID=Potri.001G265200.1.v4.1 annot-version=v4.1 ATGGAGGCGGCGGTGATAGACGCTGGAAGTCAGCTCCTTAAAGCCGGCAGTGCAGTTCCAGATCAAGCTCCCCCCATGATAATTCCGAGCCAAATGATAC GAGTGGTGGAAGATGGAACATCAGGTGATAATAACGAATCAGTATTTGAGGATGTAACTGTCGATCCAGTGGTTCGAGGTCACATAAGGAATTGGGATGC AATGGAAGATTTATTGCAGTATGTTTTATACGGTGGACTTGACTGGGAAGAGGGAAATGAAGGCCAAATCTTGTTTACTGAACCGCTTTGCACTCCCAAG GCTGTGAGAGAACAACTGGTGCAATTGATGTTTGAGACGTTTAATGTTTCGGGATTTTATGCATCGGAGCAGGCGGTGTTGTCTCTTTATGCAGTTGGGC GTATCTCTGGGTGCACTGTTGATATTGGTCATGGAAAGATTGATATTGCACCAGTACTTGAAGGTGCTGTTCAGCACATTGCTTCGAGAAGATATGAAAT TGGTGGTGTTGATTTGACAAAGTTACTTGCCCAAGAACTGGGTAAATCTAATCCTCTGGTGAATCTTAATGCCTCTGATGTCGAGATGTTAAAAGTAAAG TACTCATGTTGTGCTGAAGATGAGCTTGCTTATGAGAAGACCCAAAGGTCAAGTGATGAGGAGGAGCATACCCTTCCTGATGGACAGGTGATTAGAATTG GAAGAGAAAAATATACTGTCGGTGAGGCTTTATTTCAACCATCTATACTGGGAATAGAGGCTCATGGAATAGTTGAGCAGCTTGCACGTAGTATTTCAAT TGTTTCTTCAGAGAACCACCGCCAGCTGCTGGAAAATACTGTACTTTGTGGTGGCATAACTTCTATGCCTGGTTTTGAAGATAGGTTTCAGAAAGAAGCA AGCCTGTGCTCATCAGCTATTAGTCCTTCACTTGTAAAGCCTCCAGAATATATGCCCGATAAGTTGACGGAGTACTCTGCATGGGTGGGTGGTGCCATAC TTGCCAAAGTTGTGTTCCCTCAGAATCAGCATGTTACCAAGGGAGATTACGATGAAACTGGACCGTCCATTGTCCATCGGAAATGTTTTTGA
AA sequence Show only first row Show all	>Potri.001G265200.1 pacid=42792177 polypeptide=Potri.001G265200.1.p locus=Potri.001G265200 ID=Potri.001G265200.1.v4.1 annot-version=v4.1 MEAAVIDAGSQLLKAGSAVPDQAPPMIIPSQMIRVVEDGTSGDNNESVFEDVTVDPVVRGHIRNWDAMEDLLQYVLYGGLDWEEGNEGQILFTEPLCTPK AVREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASRRYEIGGVDLTKLLAQELGKSNPLVNLNASDVEMLKVK YSCCAEDELAYEKTQRSSDEEEHTLPDGQVIRIGREKYTVGEALFQPSILGIEAHGIVEQLARSISIVSSENHRQLLENTVLCGGITSMPGFEDRFQKEA SLCSSAISPSLVKPPEYMPDKLTEYSAWVGGAILAKVVFPQNQHVTKGDYDETGPSIVHRKCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.001G265200 [exp]	0	1	ARP7.1,ARP903
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	1.00	0.7262	Pt-GIF2.1
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.010G170000 [exp]	8.00	0.6056	DIM.3
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	10.67	0.6505
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	11.31	0.6413
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078700 [exp]	13.85	0.6680
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Potri.010G222800 [exp]	18.16	0.6374
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	19.97	0.6336	AGO906,Pt-AGO1.2
AT2G45530			RING/U-box superfamily protein...		Potri.001G452800 [exp]	22.04	0.6342
AT1G62360	HD	WAM1, WAM, SHL,...	WALDMEISTER 1, WALDMEISTER, SH...		Potri.004G004700 [exp]	23.32	0.6054	STM.2
AT2G14285			Small nuclear ribonucleoprotei...		Potri.006G167000 [exp]	26.83	0.6053

Compare expression of checked genes

Potri.001G265200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.