Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 923 / 0 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT1G78390 347 / 9e-112 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT4G19170 340 / 8e-110 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT3G14440 337 / 8e-109 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 332 / 6e-107 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G24220 332 / 7e-107 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G18350 318 / 1e-101 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G32810 87 / 7e-18 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G265900 [exp] 1065 / 0 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265600 [exp] 1065 / 0 AT3G63520 878 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 1052 / 0 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.011G112400 [exp] 355 / 1e-115 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.019G093400 [exp] 349 / 4e-113 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.005G069100 [exp] 346 / 5e-112 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 342 / 2e-110 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.009G151900 [exp] 332 / 9e-107 AT4G19170 548 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.011G084100 [exp] 329 / 1e-105 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029513 [exp] 944 / 0 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 871 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 857 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10035696 [exp] 335 / 5e-108 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10023673 [exp] 333 / 5e-107 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10011750 [exp] 303 / 5e-96 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 269 / 3e-83 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10029512 [exp] 218 / 2e-68 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 211 / 8e-63 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10009513 [exp] 207 / 1e-59 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.001G265400.1 pacid=42787733 polypeptide=Potri.001G265400.1.p locus=Potri.001G265400 ID=Potri.001G265400.1.v4.1 annot-version=v4.1 ATGGCGGAGAAATCAGAGGCGGAGAAGAATCAAGAGAACGGCGTCGGAGCAGGAAACGCAATAGTGGAAGTGAATCCGGAGCCGCAAAAAGGACTGACAT CAAAACTCATCGACTACTTGGAAAAGCTGATCGTGAACTTAATGCACGATACCTCTCAATCTCACCATTATCTCTCTGGTAACTTCGCTCCGGTTCTCGA CGAAACTGCTCCCGTTAAGGACCTTCCTGTCAAAGGGCACCTCCCTGAATGCATGAATGGGGAGTTTGTGAGGGTGGGTCCTAACCCGAAGTTTGCACCT GTGGCTGGATACCATTGGTTTGATGGAGACGGAATGATTCATGGCATGCGTATTAAAGATGGAAAGGCAGCATATGTCCGTCGATTTGTAAGGACATCAC GACTTAAACAAGAAGAGTTTTTCGGAGGTGCCAAGTTTATGAAGATTGGAGACCTCAAGGGGCTGTTTGGATTACTTATGGTTAATATGCAAATACTTCG ACTGAAATCAAAAGTATTGGACAACTCATATGGAATTGGGACCGGCAATACAAATCTCATTTATCACAATGGAAAACTTTTAGCACTTCAAGAGGCTGAT AAACCCTATGTAGTTAAAGTTATGGAAGATGGAGACCTGCAAACTCTTGGCCTGTTGGATTACGACAAAAGACTAAAACATTCTTTCACTGCTCATCCAA AGGTGGATCCATTCACTGGAGAGATGTTTACCTTTGGGTATTCACATGAACCACCATATGTGACATACAGAGTCATTTCAAAGGATGGTGTCATGCATGA CCCTGTACCAATAACAATATCAGACCCCATCATGATGCATGACTTTGCAATTACAGAGAACTATGCAGTTTTTTTGGATCTTCCTTTGTACTTCCGACCA AAGGAAATGGTGAAAGATAAGAAGTTCATATTCACATTTGATGCAACAAAAAAAGCTCGTTTTGGTGTCCTTCCACGATATGCTAAGGATGACCTCCTAA TCAAATGGTTTGAGCTTCCAAATTGCTTCATATTCCACAATGCCAATGCCTGGGAGGAGGAGGATGAAATTGTTTTAATCACTTGCCGCCTTCAAAATCC AGATTTGGACATGGTTAATGGGGCTGTCAAAGAAAAGCTTGAGAATTTCACAAATGAACTGTATGAGATGAGATTCAATATGAAAACTGGTGTAGCTTCA CAAAAGAAACTATCAGAATCTGCTGTTGATTTTCCCAGGGTGAATGAGAGTTACACTGGCAGGAAACAAAGATATGTATACGGAACCCTTCTGGACAGCA TTGCAAAGGTCACAGGGATTGTCAAATTTGATCTACATTCAGAGCCTGAGCCAGGAAAAGGAAAGATTGAAGTTGGAGGAAACGTCAAAGGCATCTTTGA CCTTGGTCCTGGTAGATTTGGTTCAGAGGCTATCTTTATCCCTCGTGAGCCAGGCACCACTTCCGAGGAAGATGATGGCTACCTGATATTCTTTGCACAT GATGAAAATACTGGAAAATCATCAGTGAATGTAATTGATGCAAAAACAATGTCAGCCAATCCTGTTGCAGTTGTTGAGTTACCACACAGAGTTCCATATG GGTTCCATGCCTTCTTTGTTTCAGAGGAACAACTTCAAGAACAGGAAAAACTGTAA
AA sequence Show only first row Show all	>Potri.001G265400.1 pacid=42787733 polypeptide=Potri.001G265400.1.p locus=Potri.001G265400 ID=Potri.001G265400.1.v4.1 annot-version=v4.1 MAEKSEAEKNQENGVGAGNAIVEVNPEPQKGLTSKLIDYLEKLIVNLMHDTSQSHHYLSGNFAPVLDETAPVKDLPVKGHLPECMNGEFVRVGPNPKFAP VAGYHWFDGDGMIHGMRIKDGKAAYVRRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQILRLKSKVLDNSYGIGTGNTNLIYHNGKLLALQEAD KPYVVKVMEDGDLQTLGLLDYDKRLKHSFTAHPKVDPFTGEMFTFGYSHEPPYVTYRVISKDGVMHDPVPITISDPIMMHDFAITENYAVFLDLPLYFRP KEMVKDKKFIFTFDATKKARFGVLPRYAKDDLLIKWFELPNCFIFHNANAWEEEDEIVLITCRLQNPDLDMVNGAVKEKLENFTNELYEMRFNMKTGVAS QKKLSESAVDFPRVNESYTGRKQRYVYGTLLDSIAKVTGIVKFDLHSEPEPGKGKIEVGGNVKGIFDLGPGRFGSEAIFIPREPGTTSEEDDGYLIFFAH DENTGKSSVNVIDAKTMSANPVAVVELPHRVPYGFHAFFVSEEQLQEQEKL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.001G265400 [exp]	0	1
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.016G074900 [exp]	4.69	0.8870
AT3G62270			HCO3- transporter family (.1)		Potri.012G081800 [exp]	6.00	0.8792
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Potri.018G040200 [exp]	7.00	0.8621
AT3G11560			LETM1-like protein (.1.2.3.4)		Potri.006G208300 [exp]	8.24	0.8893
AT1G79710			Major facilitator superfamily ...		Potri.001G041600 [exp]	12.00	0.8406
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.008G165600 [exp]	14.14	0.8309
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	17.23	0.8795
AT1G51340			MATE efflux family protein (.1...		Potri.009G053700 [exp]	18.65	0.8011
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046700 [exp]	22.80	0.8640
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.006G062300 [exp]	23.74	0.8631

Compare expression of checked genes

Potri.001G265400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.