Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CCD1.6
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63520 892 / 0 ATNCED1, ATCCD1, CCD1 carotenoid cleavage dioxygenase 1 (.1) AT1G78390 351 / 2e-113 ATNCED9, NCED9 nine-cis-epoxycarotenoid dioxygenase 9 (.1) AT3G14440 337 / 6e-109 SIS7, ATNCED3, STO1, NCED3 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) AT1G30100 337 / 7e-109 ATNCED5, NCED5 nine-cis-epoxycarotenoid dioxygenase 5 (.1) AT3G24220 333 / 1e-107 ATNCED6, NCED6 nine-cis-epoxycarotenoid dioxygenase 6 (.1) AT4G18350 323 / 1e-103 ATNCED2, NCED2 nine-cis-epoxycarotenoid dioxygenase 2 (.1) AT4G19170 322 / 6e-103 CCD4, NCED4 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) AT4G32810 77 / 2e-14 MAX4, CCD8, ATCCD8 MORE AXILLARY BRANCHING 4, carotenoid cleavage dioxygenase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G265900 [exp] 1100 / 0 AT3G63520 880 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.001G265400 [exp] 1065 / 0 AT3G63520 908 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.009G060500 [exp] 1001 / 0 AT3G63520 918 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Potri.011G112400 [exp] 354 / 2e-115 AT3G14440 868 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.019G093400 [exp] 342 / 2e-110 AT4G19170 803 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.001G393800 [exp] 341 / 2e-110 AT3G14440 883 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Potri.005G069100 [exp] 340 / 1e-109 AT4G19170 812 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Potri.003G176300 [exp] 339 / 1e-109 AT3G24220 718 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Potri.011G084100 [exp] 331 / 2e-106 AT1G30100 799 / 0.0 nine-cis-epoxycarotenoid dioxygenase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029513 [exp] 914 / 0 AT3G63520 901 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10019710 [exp] 852 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10016410 [exp] 838 / 0 AT3G63520 842 / 0.0 carotenoid cleavage dioxygenase 1 (.1) Lus10023673 [exp] 338 / 3e-109 AT3G24220 706 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10035696 [exp] 330 / 5e-106 AT4G19170 813 / 0.0 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10011750 [exp] 308 / 8e-98 AT3G24220 657 / 0.0 nine-cis-epoxycarotenoid dioxygenase 6 (.1) Lus10026185 [exp] 263 / 3e-81 AT3G14440 682 / 0.0 SALT TOLERANT 1, SUGAR INSENSITIVE 7, nine-cis-epoxycarotenoid dioxygenase 3 (.1) Lus10029512 [exp] 214 / 4e-67 AT3G63520 211 / 9e-67 carotenoid cleavage dioxygenase 1 (.1) Lus10008443 [exp] 214 / 3e-64 AT4G19170 315 / 1e-102 carotenoid cleavage dioxygenase 4, nine-cis-epoxycarotenoid dioxygenase 4 (.1) Lus10009513 [exp] 215 / 2e-62 AT3G63520 219 / 4e-64 carotenoid cleavage dioxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03055 [poplar] [flax] RPE65 Retinal pigment epithelial membrane protein
Representative CDS sequence Show only first row Show all	>Potri.001G265600.1 pacid=42791106 polypeptide=Potri.001G265600.1.p locus=Potri.001G265600 ID=Potri.001G265600.1.v4.1 annot-version=v4.1 ATGGCGGAGAAAAAGCAAGAGAACGGCGTCGGAGCTGGATGCCTAATAGTGGAGGTGAATCCAAAGCCGCAAAAAGGACTGACTTCAAAACTCGTCGACT ACTTGGAAAAGCTGATTATGAAATTGATGCATGATACCTCTCAATCACATCCTTATCTCTCCGGTAACTTCGCTCCGGTTGAAGAAACTGCTCCCGTTAA GGACCTTCCTGTAGAAGGTCACCTCCCTGAATGCATGAATGGGGAGTTTGTGAGGGTGGGTCCTAACCCGAAGTTTGCACCCGTGGCTGGATACCATTGG TTTGATGGAGACGGAATGATTCATGGTATGCGCATCAAGGATGGAAAGGCAGCATATGTCAGTCGATTTGTCAGGACATCACGACTTAAACAAGAAGAGT TTTTTGGAGGTGCCAAGTTTATGAAGATTGGAGACCTCAAGGGGCTGTTTGGATTACTTATGGTTAACATACAAATACTTCGACTGAAAACAAAAGTATT GGATAACTCATATGGAATTGGGACCGGTAATACAAATCTCATTTATCACAATGGAAAACTTTTAGCACTTCAAGAGGCAGATAAACCCTACGTGGTTAAA GTTATGGAAGATGGAGATCTGCAAACTCTTGGCCTGTTGGATTACGACAAAAGACTAAAACATCCTTTCACTGCTCATCCAAAGGTGGATCCATTCACTG GAGAGATGTTTACCTTTGGGTATTCACATGAACCGCCATATGTGACATACAGAGTCATTTCAAAGGATGGTGCCATGCATGACCCTGTACCAATAACAAT ATCAGACCCCATCATGATGCATGACTTTGCAATTACAGAGAACTATGCAGTTTTTTTGGATCTTCCTTTGTACTTCCGACCAAAGGAAATGGTGAAAGAT AAGAAGTTCGTATTCACATTTGATGCAACTAAAAAAGCTCGTTTTGGTGTCCTTCCACGATATGCAAAGGATGACCTCCTAATCAAATGGTTTGAGCTTC CAAATTGCTTCATATTCCACAATGCCAATGCCTGGGAGGAGGAGGATGAGATTGTTTTAATCACTTGCCGCCTTCAAGATCCAGGTTTCGATGTGGCCAA TTGGGCTGTCAAAGAAAAGCAAGAGAATTTTGTAGATGAACTGTATGAGATGAGATTCAATATGAAAACTGGTGTAGCTTCACAAAAGAAACTATCAGAA TCTGCTGTTGATTTTCCCAGGGTGAATGAGAGTTACACTGGCAGGAAACAAAGATATGTATACGGAACCCTTCTGGACAGCATTGCAAAGGTCACAGGGA TTGTCAAATTTGATCTACATTCAGAGCCTGAGCCAGGAAAAGGAAAGATTGAAGTTGGAGGAAACGTCAAAGGCATCTTCGACCTTGGTCCTGGTAGATT TGGTTCAGAGGCTGTCTTCATCCCTCGTGAGCTAGGCACCACTTCCGAGGAAGATGATGGATACCTGATGTTCTTTGCACATGATGAAAATACTGGAAAA TCATCAGTGAATGTAATTGATGCAAAAACAATGTCAGCCAATCCTGTTGCAGTTGTTGAGTTACCACACAGAGTTCCATATGGGTTCCATGCCTTCTTTG TTTCAGAGGAACAACTTCAAGAACAGGAAAAACTGTAA
AA sequence Show only first row Show all	>Potri.001G265600.1 pacid=42791106 polypeptide=Potri.001G265600.1.p locus=Potri.001G265600 ID=Potri.001G265600.1.v4.1 annot-version=v4.1 MAEKKQENGVGAGCLIVEVNPKPQKGLTSKLVDYLEKLIMKLMHDTSQSHPYLSGNFAPVEETAPVKDLPVEGHLPECMNGEFVRVGPNPKFAPVAGYHW FDGDGMIHGMRIKDGKAAYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNIQILRLKTKVLDNSYGIGTGNTNLIYHNGKLLALQEADKPYVVK VMEDGDLQTLGLLDYDKRLKHPFTAHPKVDPFTGEMFTFGYSHEPPYVTYRVISKDGAMHDPVPITISDPIMMHDFAITENYAVFLDLPLYFRPKEMVKD KKFVFTFDATKKARFGVLPRYAKDDLLIKWFELPNCFIFHNANAWEEEDEIVLITCRLQDPGFDVANWAVKEKQENFVDELYEMRFNMKTGVASQKKLSE SAVDFPRVNESYTGRKQRYVYGTLLDSIAKVTGIVKFDLHSEPEPGKGKIEVGGNVKGIFDLGPGRFGSEAVFIPRELGTTSEEDDGYLMFFAHDENTGK SSVNVIDAKTMSANPVAVVELPHRVPYGFHAFFVSEEQLQEQEKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.001G265600 [exp]	0	1	Pt-CCD1.6
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.008G128500 [exp]	1.00	0.9063	MYB194
AT5G04830			Nuclear transport factor 2 (NT...		Potri.010G241700 [exp]	9.32	0.8783
AT3G05200		ATL6	RING/U-box superfamily protein...		Potri.013G025800 [exp]	10.19	0.8794
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.006G155000 [exp]	14.96	0.8556
AT2G22590			UDP-Glycosyltransferase superf...		Potri.014G088400 [exp]	17.86	0.8438
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.014G159000 [exp]	21.16	0.8747	Pt-ACO1.4
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.009G042400 [exp]	25.23	0.8634
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G118401 [exp]	27.82	0.8543
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Potri.003G134900 [exp]	29.32	0.8588
AT5G61510			GroES-like zinc-binding alcoho...		Potri.004G233800 [exp]	34.14	0.8034	Pt-TED2.2

Compare expression of checked genes

Potri.001G265600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.