Plant FIBer expression Database

Potri.001G266200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15030 311 / 2e-107 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039604
[exp]
188 / 7e-58 AT3G21640 327 / 3e-110 ULTRACURVATA 2, TWISTED DWARF 1, FK506-BINDING PROTEIN 42, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Lus10029514
[exp]
157 / 3e-48 AT4G15030 169 / 4e-53 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF09725 Fra10Ac1 Folate-sensitive fragile site protein Fra10Ac1
Representative CDS sequence
>Potri.001G266200.3 pacid=42790216 polypeptide=Potri.001G266200.3.p locus=Potri.001G266200 ID=Potri.001G266200.3.v4.1 annot-version=v4.1
ATGGCCTCTTTTGGCTCTCTAAAATCTGCAGTCTTCGACAGAGAAGAGAGAAAACAGCAATATCAATCTCATATTCGAGGCCTCAACGCTTACGATCGCC
ACAAGAAATTTTTGAACGATTACGTTAGTTATTATGGGAAAGGAAAATCTACCAATGAGAAGCTTCCGATTAGAACAGACAGAGACACCCTAAGAGAAGG
ATACCGGTTCATACGTTCGGAGGAAGATGATATGGATGCATCCTGGGAGCAAAGGCTTGTGAAGCGTTACTATGATAAGCTTTTTAAAGAATATTGCATT
GCTGATATGTCACACTACAAGGTTGGCAAGATTGGTTTGAGATGGAGGACAGAGAAGGAAGTCATATCTGGAAAAGGGCAGTTCATTTGTGGTAACAAGC
ATTGTGATGTGAAAGATGGCTTGGCAAGCTATGAGGTGAACTTTTCTTATTTTGAAGCTGGTGAAAACAAGCAAGCCCTGGTGAAGTTGATACTTTGTGA
CAGATGTGCTGAGAAACTTCATTACAAAAGAAGAAAAGAGAAGGAACAAATAGAGAAAAGGGAGAAAGGAGATCGTATAAGAAAACGGGAACTACTTGAG
GTTGTTGATGATTTGGACAATGAAGGGAGCGAGGAGAAGAGAAGAGGTAAAAAGCCTACAATTTCTGGAGGCAATAAAAAAACAGACGATGATGACAACT
TTGATGAGTTTCTTGAGGGAATGTTTCCATAA
AA sequence
>Potri.001G266200.3 pacid=42790216 polypeptide=Potri.001G266200.3.p locus=Potri.001G266200 ID=Potri.001G266200.3.v4.1 annot-version=v4.1
MASFGSLKSAVFDREERKQQYQSHIRGLNAYDRHKKFLNDYVSYYGKGKSTNEKLPIRTDRDTLREGYRFIRSEEDDMDASWEQRLVKRYYDKLFKEYCI
ADMSHYKVGKIGLRWRTEKEVISGKGQFICGNKHCDVKDGLASYEVNFSYFEAGENKQALVKLILCDRCAEKLHYKRRKEKEQIEKREKGDRIRKRELLE
VVDDLDNEGSEEKRRGKKPTISGGNKKTDDDDNFDEFLEGMFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15030 unknown protein Potri.001G266200
[exp]
0 1
AT5G22080 Chaperone DnaJ-domain superfam... Potri.001G215800
[exp]
1.41 0.8869
AT1G75730 unknown protein Potri.002G022800
[exp]
2.82 0.8378
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.009G103400
[exp]
6.00 0.8390
AT2G40060 CLC2 clathrin light chain 2, Clathr... Potri.016G114700
[exp]
6.00 0.8312
AT3G59670 unknown protein Potri.005G144800
[exp]
7.48 0.8299
AT5G56270 WRKY ATWRKY2, WRKY2,... ARABIDOPSIS THALIANA WRKY DNA-... Potri.013G086000
[exp]
9.48 0.8261
AT5G41960 unknown protein Potri.003G146100
[exp]
11.61 0.8336
AT1G62600 Flavin-binding monooxygenase f... Potri.001G121100
[exp]
11.95 0.8259
AT4G31040 CemA-like proton extrusion pro... Potri.018G150000
[exp]
15.03 0.8403
AT2G36740 ATSWC2 sequence-specific DNA binding ... Potri.001G412800
[exp]
15.19 0.7593

Potri.001G266200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.