Plant FIBer expression Database

Potri.001G266504 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G000350
[exp]
120 / 8e-33 AT1G43760 74 / 8e-14 DNAse I-like superfamily protein (.1)
Potri.004G015067
[exp]
91 / 2e-24 AT3G09510 48 / 2e-07 Ribonuclease H-like superfamily protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G266504.1 pacid=42792660 polypeptide=Potri.001G266504.1.p locus=Potri.001G266504 ID=Potri.001G266504.1.v4.1 annot-version=v4.1
ATGATTAGCAGGGGGTGTAGATGGCGAGTCGGTTTAGGGAACTTGATACATGTGTGGAATGATGCATGGATTAAGGATGATTCGTGTCGGGTTGTCGAAA
CTCCAGTAATCGAGGGTTTGGAGAATATGAGGGTCAGTGATCTTATGATTCCCAAAGAGAGGAGGTGGGATTGGAATCTGCTAGAAGCTTTATTTCTCCC
ACGAGATGTTTTGGCCATTAGTAGTATTCCGTTATCTGCATCGGTATTGAAGGGTAAGAGAATTTGGCACTTTAGCAAAAATGGGATGTATACGGCCAAG
TCAGGATATAGAGTAGCCTTAGAGACTGAGAAACCAGAATTGAGGGACCGTGGAGGAAATTATGGAATGATCTTAAGCTACCTCTTAAAATCAAGTTCTT
TCTATGGAGGGCATGCACTGAGAGTATTCCTACGCGGTTGA
AA sequence
>Potri.001G266504.1 pacid=42792660 polypeptide=Potri.001G266504.1.p locus=Potri.001G266504 ID=Potri.001G266504.1.v4.1 annot-version=v4.1
MISRGCRWRVGLGNLIHVWNDAWIKDDSCRVVETPVIEGLENMRVSDLMIPKERRWDWNLLEALFLPRDVLAISSIPLSASVLKGKRIWHFSKNGMYTAK
SGYRVALETEKPELRDRGGNYGMILSYLLKSSSFYGGHALRVFLRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22440 unknown protein Potri.001G266504
[exp]
0 1
AT4G09720 AtRABG3a RAB GTPase homolog G3A (.1.2.3... Potri.007G079700
[exp]
13.85 0.6558
AT1G21430 YUC11 Flavin-binding monooxygenase f... Potri.016G003300
[exp]
14.49 0.6317 FML10
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.002G050400
[exp]
15.00 0.6291
AT2G14760 bHLH bHLH084 basic helix-loop-helix (bHLH) ... Potri.009G089000
[exp]
17.74 0.6721
AT3G04900 Heavy metal transport/detoxifi... Potri.001G326100
[exp]
17.97 0.6043
AT5G53820 Late embryogenesis abundant pr... Potri.004G106350
[exp]
21.54 0.6051
AT2G31335 unknown protein Potri.019G012603
[exp]
24.65 0.5951
Potri.009G102600
[exp]
27.49 0.5172
AT5G02180 Transmembrane amino acid trans... Potri.016G100300
[exp]
57.06 0.6651
Potri.012G116401
[exp]
79.18 0.4957

Potri.001G266504 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.