Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FRD3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08040 598 / 0 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT1G51340 563 / 0 MATE efflux family protein (.1.2) AT4G38380 329 / 4e-106 MATE efflux family protein (.1) AT2G38330 313 / 2e-100 MATE efflux family protein (.1) AT2G21340 69 / 4e-12 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061100 [exp] 882 / 0 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G053700 [exp] 605 / 0 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.016G053600 [exp] 578 / 0 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G143400 [exp] 349 / 1e-113 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 343 / 5e-111 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 323 / 9e-104 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.005G102800 [exp] 322 / 4e-103 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G122900 [exp] 72 / 4e-13 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039609 [exp] 697 / 0 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10029517 [exp] 665 / 0 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 654 / 0 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2) Lus10042365 [exp] 528 / 0 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2) Lus10026303 [exp] 528 / 0 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10027367 [exp] 528 / 0 AT1G51340 664 / 0.0 MATE efflux family protein (.1.2) Lus10012227 [exp] 348 / 4e-113 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 324 / 1e-103 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 280 / 2e-87 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10002856 [exp] 272 / 5e-85 AT2G38330 477 / 2e-165 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.001G266900.1 pacid=42793428 polypeptide=Potri.001G266900.1.p locus=Potri.001G266900 ID=Potri.001G266900.1.v4.1 annot-version=v4.1 ATGTCTGAGGAAAGTGCTTCGCAGCCAGCTGGCCTGAGAAAGTCGAAGATGCCACTCTCTGTTTTCTTTAGAGATGCAAGACTATTCAAGAAGGATGAAC TTGGTTCGGAGATCATAAGGATTGCATTGCCTGCAGCAATGGCTTTAGCTGCTGATCCCGTTGCCTCCCTGATTGACACAGCCTTCATTGGCCGTCTAGG TCCAGTGGAAATAGCTGCGGTAGGAGTTGCTATTGCCATATTTAATCAGGCCTCAAAAGTCACCATATTCCCTTTGGTTAGTATAACGACTTCTTTTGTT GCTGAGGAAGATACAGTTCACAGAAATACCAAAATTGAAGCAGAGAAGGCTGAGGACATGAAGAAAGATGCGAAAAGTGGTGAAGCGAAAGAATCAGTTC CTAATGATGAAATGCTTGAGAGCTTAGAGAAAGGCTCAGCCACAAACAACGAAAAGAACATCGAAAATAAATATTCACTGTCGGAGGATGATTGCAAGAC AATCACAAGCAGGTCTTCCACTCATACTGACACAGAAAGTGTAAATCCCGAACAAAAGAACGAGAGGCGACATATCCCCTCAGCGTCGACAGCATTGATT GTTGGTGGAATTCTTGGTCTAGTGCAAGCTATATTCCTCATATTTGGGGCAAAACCTCTCCTGCATATTATGGGTGTGAAATCTGGTTCAGCGATGTTAA ACCCTGCAAGGAAGTACTTGACATTGAGAGCTCTAGGTTCTCCTGCAGTTCTTTTGTCATTGGCAATGCAAGGGGTCTTTCGAGGCTTTAAAGACACAAA AACCCCTTTATACGCCACTGTAATAGGAGATTTAACAAATATCATCTTAGACCCGATATTTATCTTCGTCTGCCGCTGGGGTGTCAGTGGTGCTGCTATT GCTCACGTCGTTTCCCAGTACTTGATTTCAGTGATCCTCTTGTGGAGGTTGATGAAGAAAATTGATCTTTTGCCCCCAAGAGTGAAAGATTTGCAATTTA GTCGGTTCCTCAAAAATGGATTTCTGTTGTTAGCACGAGTTATAGCGGCCACAATCTGTGTGACCCTGGCAGCATCTAGGGCTGCACGACTGGGTTCAAC AACTATGGCTGCCTTCCAGATCTGCTTACAAGTTTGGTTGACATCATCACTTCTTGCAGATGGCTTCGCTGTTGCTGGACAGGCAATCATTGCTTGTGCA TTTGCTGAAAAGGACTACCAAAAGGCAACAACTGCTGCCACCCGAGTGTTACAGATGAGTTTTATTCTTGGTATTGGGCTAGCTGTGGTTGTTGGACTTG CCCTGCACTTTGGTGATATAATATTTTCAAAAGATCCTAATGTTCTTCGTATCATAGCCATCGGCATTCCGTTTGTTGCTGGTACACAACCCATCAACTC GATAGCTTTTGTCTTTGATGGTGTAAACTTTGGAGCATCTGATTTTGCATACTCTTCATATTCCATGGTTCTAGTGGCCACAGCAAGCATTGCAGCCATT TTTGTTCTCTCTAAAACCAGTGGATTTGTTGGAATTTGGGTTGCCTTGACCATCTTCATGGGGCTACGCGCATTTGCCGGCGTATGGAGGATGGGAACTG GAACTGGACCATGGCGTTTTCTCAGAGGGCGATTGTTGTCATAG
AA sequence Show only first row Show all	>Potri.001G266900.1 pacid=42793428 polypeptide=Potri.001G266900.1.p locus=Potri.001G266900 ID=Potri.001G266900.1.v4.1 annot-version=v4.1 MSEESASQPAGLRKSKMPLSVFFRDARLFKKDELGSEIIRIALPAAMALAADPVASLIDTAFIGRLGPVEIAAVGVAIAIFNQASKVTIFPLVSITTSFV AEEDTVHRNTKIEAEKAEDMKKDAKSGEAKESVPNDEMLESLEKGSATNNEKNIENKYSLSEDDCKTITSRSSTHTDTESVNPEQKNERRHIPSASTALI VGGILGLVQAIFLIFGAKPLLHIMGVKSGSAMLNPARKYLTLRALGSPAVLLSLAMQGVFRGFKDTKTPLYATVIGDLTNIILDPIFIFVCRWGVSGAAI AHVVSQYLISVILLWRLMKKIDLLPPRVKDLQFSRFLKNGFLLLARVIAATICVTLAASRAARLGSTTMAAFQICLQVWLTSSLLADGFAVAGQAIIACA FAEKDYQKATTAATRVLQMSFILGIGLAVVVGLALHFGDIIFSKDPNVLRIIAIGIPFVAGTQPINSIAFVFDGVNFGASDFAYSSYSMVLVATASIAAI FVLSKTSGFVGIWVALTIFMGLRAFAGVWRMGTGTGPWRFLRGRLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.001G266900 [exp]	0	1	Pt-FRD3.2
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Potri.009G005600 [exp]	4.58	0.9674
AT2G01900			DNAse I-like superfamily prote...		Potri.010G101700 [exp]	8.48	0.9669
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.015G006000 [exp]	9.32	0.9666
AT2G47000		PGP4 ,MDR4, ABC...	MULTIDRUG RESISTANCE 4, ARABID...		Potri.010G003000 [exp]	12.00	0.9622
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Potri.006G029200 [exp]	14.83	0.9056
AT5G14650			Pectin lyase-like superfamily ...		Potri.001G346800 [exp]	15.32	0.9590
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Potri.004G156300 [exp]	16.61	0.9587
AT4G00910			Aluminium activated malate tra...		Potri.001G085900 [exp]	17.14	0.9586
AT3G14470			NB-ARC domain-containing disea...		Potri.004G196100 [exp]	19.41	0.9544
AT1G16310			Cation efflux family protein (...		Potri.008G083600 [exp]	21.79	0.9519	PtrMTP9

Compare expression of checked genes

Potri.001G266900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.