Plant FIBer expression Database

HF.1 (Potri.001G267400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol HF.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G26900 931 / 0 HISN4, HISHF, AT-HF HIS HF (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G061700
[exp]
1039 / 0 AT4G26900 958 / 0.0 HIS HF (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032635
[exp]
961 / 0 AT4G26900 941 / 0.0 HIS HF (.1)
Lus10043113
[exp]
950 / 0 AT4G26900 937 / 0.0 HIS HF (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0014 Glutaminase_I PF00117 GATase Glutamine amidotransferase class-I
CL0036 TIM_barrel PF00977 His_biosynth Histidine biosynthesis protein
Representative CDS sequence
>Potri.001G267400.2 pacid=42790310 polypeptide=Potri.001G267400.2.p locus=Potri.001G267400 ID=Potri.001G267400.2.v4.1 annot-version=v4.1
ATGGAGGCAGCACCATTTACTCCTCCTCCTACTTCTTCCTTCAAAACTCCATCCATCTCCTCCTCTTCTTCTCTTATATCTCTTTCAAAAAATTTCTCGA
GAAACCACCTTCCTTCGAAGTTCAAGTCACCTAGAAATCTCTCAGTTCGTGCATCCAATGATGATTCAGTAGTGACTCTGCTTGATTATGGTGCTGGAAA
TGTCCGTAGTGTCCGAAACGCCATTCGTCATCTCGGTTTCCAAATCAAAGATGTACAAACTCCGAAAGACATTCTAAATGCAAGGCGTCTTATATTTCCT
GGTGTTGGGGCTTTTGCACCTGCTATGGATGTCCTTAACAACACTGGGATGGGCGAAGCACTCTGTACCTATATTCAGAATGATCGCCCATTTTTAGGCA
TCTGTCTTGGGCTTCAGCTACTTTTCGAGTCCAGCGAGGAGAATGGTCCAGTGGGTGGTCTTGGTCTGATTCCTGGCGTGGTGGGGCGGTTTGACTCCTC
AAATGGTTTCAGAGTACCTCATATTGGCTGGAATGCTTTGCAAATCACTAAAGACTCTGAAATTTTGGATGACATTGGAAACCGCCATGTGTATTTTGTT
CACTCTTACCGTGCCATGCCATCAAATGAAAATAAAGAGTGGATTTCCTCTACCTGCAATTATGGTGATGAATTTATAGCTTCTGTTAGAAAGGGAAAAG
TGCATGCTGTTCAATTCCATCCAGAGAAGAGTGGAGATGTTGGTCTTTCAGTATTGAGGAGCTTTTTGCTTCCAAAGTCATCTCTGACAGAGAAGCGTAC
TGAAAGGAAAGCATCAAAACTTGCAAAAAGGGTAATTGCTTGTCTTGATGTGAGGACAAATGACGAAGGAGATCTTGTTGTAACCAAAGGAGACCAGTAC
AATGTAAGAGAACATGCAGAAAAGAATGAGGTTAGAAACCTTGGCAAGCCAGTGGAACTTGCTGGAAAGTATTATGAAGACGGTGCTGATGAGGTTAGTT
TTTTGAATATCACTGGCTTCCGCGACTTTCCCTTGGGTGATTTGCCAATGTTGCAGGTTTTGAGATGCGCTTCAGAAAATGTTTTTGTACCGTTGACAGT
TGGAGGTGGAATTAGAGATTTTACTGATTCCAATGACAGGTATTATTCTAGCTTGGAAGTTGCATCCGAATATTTCAGGTCTGGGGCTGATAAGATTTCT
ATTGGAAGTGATGCAGTCCATGCTGCAGAAGAATATTTAAAAACTAAGGTAAAGACTGGGAAGAGCAGCATAGAACAGATATCAAGAGTCTATGGAAATC
AGGCAGTTGTTGTAAGTATTGACCCTCGTAGAGTGTACCTCAATGATCCTAGTGATGTGGAGTTCAAGTCAATTAGGTTGACTAACCCAGGTCCAAATGG
AGAAGAATATGCCTGGTATCAATGCACGATTAATGGTGGGCGAGAAGGTCGACCAATTGGAGCTTATGAACTTGCAAAAGCAGTTGAAGAGCTGGGGGCT
GGAGAAATATTACTGAATTGCATTGACTGTGATGGTCAAGGGAAAGGATTTGATATAGATCTAATAAAGATGATCTCTGATGCTGTGAACATCCCTGTGA
TTGCAAGCAGTGGTGCAGGTGCTGTTGAACACTTCTCAGATGTGTTCTCAAAGACAAATGCTTCTGCTGCCCTCGCTGCTGGCATTTTCCATAGGAAAGA
GGTGCCCATTCGGTCTGTAAAAGAGCACTTGTTGAAGGAAGGCATAGAAGTCAGGATCTAA
AA sequence
>Potri.001G267400.2 pacid=42790310 polypeptide=Potri.001G267400.2.p locus=Potri.001G267400 ID=Potri.001G267400.2.v4.1 annot-version=v4.1
MEAAPFTPPPTSSFKTPSISSSSSLISLSKNFSRNHLPSKFKSPRNLSVRASNDDSVVTLLDYGAGNVRSVRNAIRHLGFQIKDVQTPKDILNARRLIFP
GVGAFAPAMDVLNNTGMGEALCTYIQNDRPFLGICLGLQLLFESSEENGPVGGLGLIPGVVGRFDSSNGFRVPHIGWNALQITKDSEILDDIGNRHVYFV
HSYRAMPSNENKEWISSTCNYGDEFIASVRKGKVHAVQFHPEKSGDVGLSVLRSFLLPKSSLTEKRTERKASKLAKRVIACLDVRTNDEGDLVVTKGDQY
NVREHAEKNEVRNLGKPVELAGKYYEDGADEVSFLNITGFRDFPLGDLPMLQVLRCASENVFVPLTVGGGIRDFTDSNDRYYSSLEVASEYFRSGADKIS
IGSDAVHAAEEYLKTKVKTGKSSIEQISRVYGNQAVVVSIDPRRVYLNDPSDVEFKSIRLTNPGPNGEEYAWYQCTINGGREGRPIGAYELAKAVEELGA
GEILLNCIDCDGQGKGFDIDLIKMISDAVNIPVIASSGAGAVEHFSDVFSKTNASAALAAGIFHRKEVPIRSVKEHLLKEGIEVRI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Potri.001G267400
[exp]
0 1 HF.1
AT4G15010 Mitochondrial substrate carrie... Potri.001G222400
[exp]
1.00 0.8618
AT3G05340 Tetratricopeptide repeat (TPR)... Potri.013G021100
[exp]
2.44 0.8398
AT5G14590 Isocitrate/isopropylmalate deh... Potri.001G347800
[exp]
2.44 0.8512
AT3G52140 tetratricopeptide repeat (TPR)... Potri.009G065300
[exp]
6.92 0.8186
Potri.019G076200
[exp]
9.79 0.7392
AT2G22410 SLO1 SLOW GROWTH 1 (.1) Potri.004G217900
[exp]
9.89 0.8138
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Potri.002G157100
[exp]
14.96 0.7944
AT1G77550 tubulin-tyrosine ligases;tubul... Potri.006G141900
[exp]
15.71 0.7931
AT1G50380 Prolyl oligopeptidase family p... Potri.007G001300
[exp]
16.67 0.7210
AT5G64580 EMB3144 EMBRYO DEFECTIVE 3144, AAA-typ... Potri.005G059700
[exp]
16.73 0.8100

Potri.001G267400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.