Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52105 87 / 9e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G061800 [exp] 121 / 2e-38 AT3G52105 90 / 1e-25 unknown protein Potri.016G053400 [exp] 91 / 9e-26 AT3G52105 76 / 9e-20 unknown protein Potri.006G054200 [exp] 79 / 3e-21 AT3G52105 67 / 2e-16 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029521 [exp] 111 / 2e-34 AT3G52105 85 / 8e-24 unknown protein Lus10016415 [exp] 89 / 3e-25 AT3G52105 81 / 3e-22 unknown protein Lus10019704 [exp] 89 / 3e-25 AT3G52105 80 / 6e-22 unknown protein Lus10011321 [exp] 86 / 6e-24 AT3G52105 72 / 1e-18 unknown protein Lus10012208 [exp] 85 / 1e-23 AT3G52105 70 / 5e-18 unknown protein Lus10042363 [exp] 84 / 1e-23 AT3G52105 75 / 6e-20 unknown protein Lus10026305 [exp] 82 / 5e-20 AT3G57570 229 / 2e-65 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G267501.1 pacid=42792418 polypeptide=Potri.001G267501.1.p locus=Potri.001G267501 ID=Potri.001G267501.1.v4.1 annot-version=v4.1 ATGCTGCAGCTTTTCTTTACGGTGGCTTTCTCTGCGGTGCCTTTGACTTTGTACATTCCACCTATGAGGAGCTTGAATCTCTTTGTGGAAACCATGGAAG GTCTGTTAAGGGAGTCAAGTGTTTATACCACGAGACTCTATCCTCGTGCAAGGCACGCGTGGTCTAGGTTCTTGGATATCTTGCTTTGCAATTTCAGGTT AGGGTAG
AA sequence Show only first row Show all	>Potri.001G267501.1 pacid=42792418 polypeptide=Potri.001G267501.1.p locus=Potri.001G267501 ID=Potri.001G267501.1.v4.1 annot-version=v4.1 MLQLFFTVAFSAVPLTLYIPPMRSLNLFVETMEGLLRESSVYTTRLYPRARHAWSRFLDILLCNFRLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52105			unknown protein		Potri.001G267501 [exp]	0	1
AT2G35900			unknown protein		Potri.016G066800 [exp]	5.29	0.7182
AT4G15470			Bax inhibitor-1 family protein...		Potri.010G028900 [exp]	8.12	0.7378
AT5G63440			Protein of unknown function (D...		Potri.012G096500 [exp]	10.53	0.6873
AT1G48040			Protein phosphatase 2C family ...		Potri.010G151500 [exp]	13.41	0.6369
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	15.42	0.6497
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Potri.005G093900 [exp]	17.08	0.6796
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	25.09	0.6745	Pt-XF1.2
					Potri.014G134750 [exp]	26.07	0.6497
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	30.03	0.6196	Pt-AERO1.1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154500 [exp]	31.49	0.6288

Compare expression of checked genes

Potri.001G267501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.