Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57670 327 / 2e-110 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT1G51220 322 / 3e-109 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G20880 316 / 5e-106 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G13290 285 / 2e-95 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G34790 277 / 3e-92 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G08290 276 / 3e-91 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G34370 107 / 3e-26 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 97 / 2e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 92 / 2e-20 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 91 / 3e-20 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G062300 [exp] 465 / 6e-166 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.003G205000 [exp] 360 / 2e-124 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G018900 [exp] 357 / 3e-123 AT1G51220 353 / 7e-122 WIP domain protein 5 (.1) Potri.016G052700 [exp] 346 / 1e-118 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G143700 [exp] 315 / 7e-107 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.004G183900 [exp] 312 / 2e-105 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.010G129000 [exp] 294 / 3e-99 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 281 / 4e-94 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.013G114600 [exp] 105 / 3e-25 AT1G34370 495 / 3e-172 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031838 [exp] 326 / 4e-110 AT3G57670 386 / 4e-133 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10031271 [exp] 322 / 1e-108 AT3G57670 379 / 6e-131 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10029525 [exp] 309 / 6e-105 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10039613 [exp] 302 / 5e-102 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10004887 [exp] 301 / 2e-100 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10021700 [exp] 296 / 2e-99 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10035044 [exp] 294 / 2e-98 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10020597 [exp] 293 / 3e-97 AT1G08290 335 / 7e-114 WIP domain protein 3 (.1) Lus10033454 [exp] 289 / 1e-96 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10020923 [exp] 288 / 4e-96 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13894 [poplar] [flax] zf-C2H2_4 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.001G267900.2 pacid=42788279 polypeptide=Potri.001G267900.2.p locus=Potri.001G267900 ID=Potri.001G267900.2.v4.1 annot-version=v4.1 ATGGCAGACCCTTGCTCTAATCTCTTCAGTACTGGATCTTTCAACTTCGTGCTTCTTAATCCTCACTACAGTACTGCTTTCACTTCTTACTCGAATCCTT CTAGCCTTCATGCTTTCTCAAACAACTACTCGCTCGACAACAAATCTTCAATTCCTCCCTCATCGCCTCCTCCAAAAGAAGCCCTTCCCCTGATAGAATA CTTAAGTCCCGCAAGACAACAAGAAGAGCATCGTGATTCCTCATGCAGTTCCATGGAAGAGGACAAGAACATGAAAAAAGATGATGATAACCTCTTTTTT AGTACTGCAGATGGTAATGTTGAGCCCGTGACTGTAGCTCTGCATATAGGCCTCCCTAACCCTAGTTCCGATCTGGAGATCAGGGCACTTAGGGTTTTCC CATCTCCAAATGCACCAGATAAGGGAGAGATGAGTGCAGTTTCAGGGTACCCTTTGGAGAAACTAAACAAGGGTCAGTATTGGATTCCTACACCTTCCCA GATTCTTATTGGTCCAAGTCAATTTTCATGTCCTCTTTGCTCCAAGACCTTTAACAGATACAACAACTTGCAGATGCATATGTGGGGACATGGATCTCAG TACAGAAAAGGACCTGACTCTTTAAGAGGAACCCAGCCAACAGCGATGCTAAGACTTCCATGTTATTGTTGTGCAACAGGTTGCAAGCACAACATTGATC ATCCAAGTGCAAGACCGCTCAAAGATTTTAGAACTCTCCAAACACATTACAAGAGAAAGCATGGGATCAAACCCTTTATGTGTAGAAAATGTGGTAAGCC ATTTGCTGTGAAAGGAGATTGGAGAACACATGAAAAGAACTGTGGGAAAATATGGTATTGCATTTGTGGGTCTGATTTTAAGCACAAGAGGTCTCTAAAA GACCACATTAAGGCCTTTGGCCATGGCCATGTTGGCATTGATTGCTTTGAAGAAGAGGATGAACTAGCATCTGAAAGTACTGAACATGATGGGGAATCCT GTATGTGA
AA sequence Show only first row Show all	>Potri.001G267900.2 pacid=42788279 polypeptide=Potri.001G267900.2.p locus=Potri.001G267900 ID=Potri.001G267900.2.v4.1 annot-version=v4.1 MADPCSNLFSTGSFNFVLLNPHYSTAFTSYSNPSSLHAFSNNYSLDNKSSIPPSSPPPKEALPLIEYLSPARQQEEHRDSSCSSMEEDKNMKKDDDNLFF STADGNVEPVTVALHIGLPNPSSDLEIRALRVFPSPNAPDKGEMSAVSGYPLEKLNKGQYWIPTPSQILIGPSQFSCPLCSKTFNRYNNLQMHMWGHGSQ YRKGPDSLRGTQPTAMLRLPCYCCATGCKHNIDHPSARPLKDFRTLQTHYKRKHGIKPFMCRKCGKPFAVKGDWRTHEKNCGKIWYCICGSDFKHKRSLK DHIKAFGHGHVGIDCFEEEDELASESTEHDGESCM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Potri.001G267900 [exp]	0	1
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Potri.005G084500 [exp]	2.23	0.9526
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227400 [exp]	6.32	0.9352
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G227300 [exp]	8.12	0.9287
AT2G30370		EPFL6, CHAL	EPF1-like 6, CHALLAH, allergen...		Potri.013G155500 [exp]	9.16	0.9220
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Potri.006G117700 [exp]	12.00	0.9123
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Potri.011G025000 [exp]	13.60	0.9212	Pt-ATML1.1
AT1G54740			Protein of unknown function (D...		Potri.008G019600 [exp]	14.42	0.8633
AT5G66800			unknown protein		Potri.007G042600 [exp]	14.69	0.8805
AT5G49700	AT-hook		Predicted AT-hook DNA-binding ...		Potri.009G070300 [exp]	14.69	0.9003
AT2G23060			Acyl-CoA N-acyltransferases (N...		Potri.010G144700 [exp]	14.69	0.9145

Compare expression of checked genes

Potri.001G267900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.