Plant FIBer expression Database

Potri.001G268200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G08505 462 / 2e-164 C3HZnF zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2)
AT5G56930 47 / 1e-05 C3HZnF EMB1789 embryo defective 1789, CCCH-type zinc finger family protein (.1)
AT3G47120 41 / 0.0008 C3HZnF RNA recognition motif (RRM)-containing protein (.1)
AT5G01520 40 / 0.001 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G062600
[exp]
660 / 0 AT3G08505 452 / 3e-160 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2)
Potri.004G134400
[exp]
346 / 8e-118 AT3G08505 326 / 2e-110 zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2)
Potri.003G069700
[exp]
44 / 0.0001 AT5G66840 207 / 2e-60 SAP domain-containing protein (.1)
Potri.005G061100
[exp]
44 / 0.0002 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0537 CCCH_zf PF00642 zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
CL0229 RING PF13639 zf-RING_2 Ring finger domain
Representative CDS sequence
>Potri.001G268200.1 pacid=42790231 polypeptide=Potri.001G268200.1.p locus=Potri.001G268200 ID=Potri.001G268200.1.v4.1 annot-version=v4.1
ATGTCTAAAAGGGTACTTTGCAAGTTTTTTGCTCATGGGGCATGCTTGAAAGGGGAGCATTGTGAATTTTCACATGATTGGAAAGATCCTCCAAATAATA
TTTGCACCTTTTATCAAAAAGGTATCTGCTCTTATGGTAGTCGATGCCGATATGAACATGTTAAACCTTCTAGGCCTGAATCTACTGCATCATCTTCATT
GACAGTTCCTTGTCAACCTCTGGGCTCAAATTCCGTGTCCCTGGCCCTTCCTGCAAGAAATGTATCGAATGGGGTGACAACAGTACCGGGTGTTCCTCCA
GAGCTTTCAAGTAGACCCTTTATTGCTCCCACTGCACCAGAATGGAATTTGGAGTCTGCACAACATGACTTCTTAGAAGATGGTGAGGTTATAGAGCCTA
GGAATGTTAAACCAGCTGACCGATCTATCTGTTCATTTGCTGCTGCTGGTAGTTGTCCTCGTGGAGATAAATGCCCCCATATTCACGGTGACTTGTGTGC
CTATTGTGGAAAGCATTGCTTACACCCTTTCAGACCTGAAGAAAGAGATGAACATTTGAAAGCATGCGAGAAGAAGCAAAAGAACCTTGATTTGTTAAAA
TATAGTCAAGAAATAGAATGCAGTGTATGCCTGGATCGTGTACTTTCAAAGCCCACGGCAGCTGAACGAAAGTTTGGTCTGCTATCAGAATGCGATCATC
CATTCTGCATATCATGTATTAGGAACTGGCGTAGTAGTTCCCCAACCTCTGGAATGGATGTCAATACTTCATTGAGGGCTTGCCCAATATGTCGCAAGCT
TTCATACTTTGTCATTCCAAGCGTTATTTGGTATTCCTCTAAAGAGGAAAAACAGGAAATTGTTGATACCTACAAGGCAAAACTCAGGTCAATAGATTGT
AAACACTTCGACTTTGGGAATGGGAACTGCCCATTTGGAACCAGCTGTTTTTACAAGCATGCATATCGAGATGGCCGCCTGGAGGAAGTTGTTTTACGTC
ATCTTGGAACTGATGATGGACAGACTGTGATAGCTAAAAATATCTGGCTGTCTGATTTCCTCGGTAGCTTACAAATAAGGTGA
AA sequence
>Potri.001G268200.1 pacid=42790231 polypeptide=Potri.001G268200.1.p locus=Potri.001G268200 ID=Potri.001G268200.1.v4.1 annot-version=v4.1
MSKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTFYQKGICSYGSRCRYEHVKPSRPESTASSSLTVPCQPLGSNSVSLALPARNVSNGVTTVPGVPP
ELSSRPFIAPTAPEWNLESAQHDFLEDGEVIEPRNVKPADRSICSFAAAGSCPRGDKCPHIHGDLCAYCGKHCLHPFRPEERDEHLKACEKKQKNLDLLK
YSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTSLRACPICRKLSYFVIPSVIWYSSKEEKQEIVDTYKAKLRSIDC
KHFDFGNGNCPFGTSCFYKHAYRDGRLEEVVLRHLGTDDGQTVIAKNIWLSDFLGSLQIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G08505 C3HZnF zinc finger (CCCH-type/C3HC4-t... Potri.001G268200
[exp]
0 1
AT1G76460 RNA-binding (RRM/RBD/RNP motif... Potri.005G256700
[exp]
2.44 0.7472
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Potri.006G134000
[exp]
4.47 0.7705
AT1G43860 sequence-specific DNA binding ... Potri.005G186700
[exp]
11.83 0.7032
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.013G150100
[exp]
13.96 0.7209
AT5G50970 transducin family protein / WD... Potri.012G108100
[exp]
16.58 0.7015
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.002G072900
[exp]
19.51 0.7282 SEU.1
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein (.1.... Potri.004G225800
[exp]
19.79 0.6973
AT4G16440 ferredoxin hydrogenases (.1) Potri.016G008700
[exp]
20.39 0.6992
AT3G05090 LRS1 LATERAL ROOT STIMULATOR 1, Tra... Potri.013G033800
[exp]
21.21 0.7035
AT5G44090 Calcium-binding EF-hand family... Potri.005G227100
[exp]
21.54 0.6963

Potri.001G268200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.