Plant FIBer expression Database

Potri.001G268800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G41905 40 / 2e-06 unknown protein
AT3G57690 39 / 6e-06 AGP23, ATAGP23 ARABINOGALACTAN-PROTEIN 23, arabinogalactan protein 23 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G063600
[exp]
39 / 1e-05 AT2G41905 51 / 1e-10 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G268800.1 pacid=42788865 polypeptide=Potri.001G268704.1.p locus=Potri.001G268800 ID=Potri.001G268800.1.v4.1 annot-version=v4.1
ATGGAAATGAAGAAGATTGCCTGTGCTATCTTATTCGCTGCTGCCTCCGTGAGTGCAGTCATGGCTGATGAGGTTGCTGCTCCTGCCCCATCACCAACAA
GTGGTGCCTCAGTTAGCTTGCCAGTAGTTGGTTCATTGGTCGGTGCCTCCCTTGCTTCACTCATTGCATTGTACTTGCAATAA
AA sequence
>Potri.001G268800.1 pacid=42788865 polypeptide=Potri.001G268704.1.p locus=Potri.001G268800 ID=Potri.001G268800.1.v4.1 annot-version=v4.1
MEMKKIACAILFAAASVSAVMADEVAAPAPSPTSGASVSLPVVGSLVGASLASLIALYLQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G41905 unknown protein Potri.001G268800
[exp]
0 1
AT1G07300 josephin protein-related (.1) Potri.001G249500
[exp]
11.74 0.8589
AT1G67050 unknown protein Potri.017G115801
[exp]
15.55 0.8723
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.001G457000
[exp]
17.02 0.8492 Pt-HMGR3.1
Potri.009G152101
[exp]
24.81 0.8232
AT4G13440 Calcium-binding EF-hand family... Potri.019G029100
[exp]
25.29 0.8677
Potri.001G387900
[exp]
33.09 0.8674
AT1G20190 ATHEXPALPHA1.14... EXPANSIN 11, expansin 11 (.1) Potri.005G244100
[exp]
34.24 0.8401 Pt-ATEXPA11.1,PtrEXPA18
AT1G66870 Carbohydrate-binding X8 domain... Potri.014G114500
[exp]
45.34 0.8566
AT4G19170 CCD4, NCED4 carotenoid cleavage dioxygenas... Potri.009G152000
[exp]
47.33 0.8563
AT5G14920 Gibberellin-regulated family p... Potri.001G350600
[exp]
48.67 0.8341

Potri.001G268800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.