Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05800 81 / 2e-17 unknown protein AT3G11290 68 / 6e-13 unknown protein AT2G19220 48 / 3e-06 unknown protein AT3G11310 46 / 1e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299100 [exp] 353 / 2e-123 AT5G05800 94 / 3e-21 unknown protein Potri.005G153700 [exp] 350 / 3e-122 AT5G05800 94 / 2e-21 unknown protein Potri.008G176600 [exp] 350 / 4e-122 AT5G05800 96 / 3e-22 unknown protein Potri.013G144650 [exp] 346 / 8e-121 AT5G05800 93 / 5e-21 unknown protein Potri.007G062850 [exp] 346 / 8e-121 AT5G05800 93 / 5e-21 unknown protein Potri.014G091925 [exp] 346 / 8e-121 AT5G05800 93 / 5e-21 unknown protein Potri.004G230401 [exp] 345 / 1e-119 AT5G05800 100 / 4e-23 unknown protein Potri.003G192350 [exp] 345 / 2e-119 AT5G05800 100 / 4e-23 unknown protein Potri.001G402200 [exp] 342 / 8e-119 AT5G05800 100 / 1e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002039 [exp] 43 / 0.0002 AT3G11290 91 / 2e-20 unknown protein Lus10024329 [exp] 42 / 0.0002 AT5G05800 81 / 7e-17 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF12776 [poplar] [flax] Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G268908.1 pacid=42791972 polypeptide=Potri.001G268908.1.p locus=Potri.001G268908 ID=Potri.001G268908.1.v4.1 annot-version=v4.1 ATGTTGCGTATATTTTGTGACCTATGTATTAAGGCCATTGATATGGGAATGAGACCTAATATCCATTTTGATAAAACAGGATGGAAATTTCTTATAACAT CATTCAAAGAACAAACCGGCCATGCATTCACTATAACACAACCGGAAAAAAAATGGGATGGATGCAAAAAGGATTGGAGGATATGGACAAAGTTGATTTC TGAAACTGGTGTGGGCTGGAGTAGTGAATTAGGAACAAATTTAGCTAGCAATGAGTGGTGGAAAGCAAAACTTCAGGAAATTAGAGGAGCCAAAAAATTT AGACATGTTGGTATTGAACCGTCTTTGAAGATTAAATTTGACATAATGTATTCCAGCATTGCTGCTATTGAAGAATATGCGTGGGCTCCATCATTAGGAG TACTTGGTGGCAATGATATCGATCCTTTCATTAACAAGGTCAACATTGATGGTACTGATATGGAAGAAAGAAGCGATGATTCAGAGGAGGATGAGATTTC AAATTTGAAGAATGACATGTCTCAAATGGTTGGCGGGGTGAATATGTCGAGCAGCAACAACATAAAGAGTAGTGGCAAAAGAAAAGAAAGAGATCCCTCT AAGGTTCGAGGCAGAAAGAAGAAGACATCTGGAATTGGTGTCCAGCTGCTGTCACGGTGGGATCAACTACTTGAGAGTATGTCGACTAGGAGTAATTTCA CTTCTTTACATATGGATCGGCAAGACTGTAGTATTCTCGAGGTGATGGCTGAGCTCTAA
AA sequence Show only first row Show all	>Potri.001G268908.1 pacid=42791972 polypeptide=Potri.001G268908.1.p locus=Potri.001G268908 ID=Potri.001G268908.1.v4.1 annot-version=v4.1 MLRIFCDLCIKAIDMGMRPNIHFDKTGWKFLITSFKEQTGHAFTITQPEKKWDGCKKDWRIWTKLISETGVGWSSELGTNLASNEWWKAKLQEIRGAKKF RHVGIEPSLKIKFDIMYSSIAAIEEYAWAPSLGVLGGNDIDPFINKVNIDGTDMEERSDDSEEDEISNLKNDMSQMVGGVNMSSSNNIKSSGKRKERDPS KVRGRKKKTSGIGVQLLSRWDQLLESMSTRSNFTSLHMDRQDCSILEVMAEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05800			unknown protein		Potri.001G268908 [exp]	0	1
					Potri.002G155700 [exp]	2.44	0.8878
AT5G61790		CNX1, ATCNX1	calnexin 1 (.1)		Potri.001G070600 [exp]	3.46	0.8474
AT4G00980			zinc knuckle (CCHC-type) famil...		Potri.002G171900 [exp]	4.24	0.8823
AT5G02770		MOS11	modifier of snc1, 11, unknown ...		Potri.016G082900 [exp]	9.79	0.8259
AT1G25370			Protein of unknown function (D...		Potri.008G122600 [exp]	10.39	0.8242
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G011650 [exp]	12.96	0.8458
AT4G20325			unknown protein		Potri.006G280600 [exp]	13.11	0.8646
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	13.67	0.8349
AT3G55560	AT-hook	AHL15, AGF2	AT-hook motif nuclear-localize...		Potri.008G058700 [exp]	13.74	0.8356
AT3G62200			Putative endonuclease or glyco...		Potri.013G003301 [exp]	14.14	0.8355

Compare expression of checked genes

Potri.001G268908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.