Plant FIBer expression Database

Pt-GR1.2 (Potri.001G269700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-GR1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52115 353 / 5e-114 AtCOM1, ATGR1 gamma response gene 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G064200
[exp]
964 / 0 AT3G52115 367 / 3e-119 gamma response gene 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037704
[exp]
455 / 1e-153 AT3G52115 341 / 5e-110 gamma response gene 1 (.1)
Lus10015699
[exp]
395 / 5e-130 AT3G52115 334 / 5e-107 gamma response gene 1 (.1)
PFAM info
Representative CDS sequence
>Potri.001G269700.2 pacid=42793398 polypeptide=Potri.001G269700.2.p locus=Potri.001G269700 ID=Potri.001G269700.2.v4.1 annot-version=v4.1
ATGAAGGGCGACCTGGAGTGTTGTCCGAAACTAGAAAATGGCGATGTCAAGTATGTCTCTGGACTCAGTACTATACTGGTAGCAACAATCCAGGAGGCGA
AAGATCGGATCTCTCAGATAGAATACATATTTTGCAACCAGCTTTACCCGAATTTCCAAGCGAAATCCAAGAGTTTGCAGAAGATTTATGCGGATGCGGA
AGGGGCGTGGAAAGAGAAGGAAAAAGATCTCTTGGAGCAAATTGAGAAACTTCGAGTTGAGAAGCAGGAAGTTGTTGAAGGAAACAAGGTTGAGAAGGAA
AAGCCGAACGAGAAGGCAAATGCGCTGCTTGCTGCTACGCTAAGAAATCGAGAATCTAGAATTGATGAGCTGGAACAGGAGGTTGTGAAGAAGTCTAAGG
AAATTGACGAGGGGATGGAATTACAGAATAAGTTACTCCAATTGGTTCAAACGAAGGCGGCTATGATAGTGGATAAAGGAAGGGAATTGAAAAGGAACGA
AGGGAAGAGCAATGAGCTGCTTGCTAAAGTGAAGAGCTTAGAGAAAAATGTTGAAGAACTGCAAGATGAGGTCAGGAAGAAGTCGGAGAAAGTAGCAGAG
AAAACAGAGTTGGCAAACAATTTGAGCAAGAGAGTTTTGTCTCTGTTATCAATGGTTGAGGATAATGAGAAGTTGAAGACTGAGAATGAACAACTCATGC
ACAAAGTAGAATGTCTGGAGAAGAATCTTAGTGGACTTAAAAACAAGCTCAGGGAGAAAACGGAAGAAACTGAAGGGGGAAGAGTACTGCAAGCAGAATT
GCTTCAACAAATTGATATGAACGCTGTAGAAATCTTGAAGCAAAAAGAACAGCTAGACATGTCCGAGAATGATAAAAAGGAGCTCTTGGAAAAAGTGAAT
GGGTTAGAGGAGAAGGTCAATGAGCTACAGGAAAATCTAAGTAGCAGTGGTAAAGAGGCTGAAGGAAAGGTTTCGTACGATAAACTTCTTCACAACATTC
AATTGAAGGACTCTGAGTTATTGGCCGAGAAGAGGAAGACGAGGGATTTGCATGGTCTTTACATGAAGTTGAGGTCTCAATACAACTACCTCTGCACAAA
GTCTGGTCTTACTATGAAGAATATGCTCAAAGACAAACTAGAAGACGAAAGTGGTTCCTTCAAGCATCAGCCGACAACTTCATCTGACGGTGGAAACAAA
AGTGTAGATGCATCTGCAGCATTTTGTGAGACGAAAGAAGTCAAAACTGAAAATGAATCCAGCGATGGCTTGGTGGACAATAAAGTTGTGAAATCAATTC
CAATCGCAAACTTCAAATCTCCTACTTCTATTTTTGTCACACCAAAATGTCCTCCCACTGTGAAATCCGCTCAAATAATTGGCACAAAGAGACCTGCATC
TAGTTGGATAGATACTAGATCTCATCAAGGAAAAGATGGTCCTGACCCTCATGATGATTTCCTTGATACCCCATTGGAGAAACTCAGGGCAGACTTGGAC
AAAACCATGGAGGAAGAAGTTCAGGATCTCCACATTGTACTTCAAAATGATAAAAACATGGACCCTAGCAGTTCAGATGATGAAACGCAGGATATAAATC
TTGATCGTAACCTACGGGAGCAGCAGATGCCAGTAACAATAGGTGGCAAAAGAGGTTTCAAGTATGTTGAACCAGTTCGAAAGAAAGCTGAGCGGCAAAA
TTTGAAAGGAGTTGAATGCAAGCAGTGCAAAAAATTCTATGACGCAGTTCTCCCCAATAATGGAGGTGATGGTCATAAGCAGAATGTCCGCTGCGAGCAT
CATGATGGTGTTTCTAGGCATCGATACAAGTATGTTCCTCCCATGACTCCTGAGGGATTTTGGAATATTGGATTTGAATCTGAAATGTGA
AA sequence
>Potri.001G269700.2 pacid=42793398 polypeptide=Potri.001G269700.2.p locus=Potri.001G269700 ID=Potri.001G269700.2.v4.1 annot-version=v4.1
MKGDLECCPKLENGDVKYVSGLSTILVATIQEAKDRISQIEYIFCNQLYPNFQAKSKSLQKIYADAEGAWKEKEKDLLEQIEKLRVEKQEVVEGNKVEKE
KPNEKANALLAATLRNRESRIDELEQEVVKKSKEIDEGMELQNKLLQLVQTKAAMIVDKGRELKRNEGKSNELLAKVKSLEKNVEELQDEVRKKSEKVAE
KTELANNLSKRVLSLLSMVEDNEKLKTENEQLMHKVECLEKNLSGLKNKLREKTEETEGGRVLQAELLQQIDMNAVEILKQKEQLDMSENDKKELLEKVN
GLEEKVNELQENLSSSGKEAEGKVSYDKLLHNIQLKDSELLAEKRKTRDLHGLYMKLRSQYNYLCTKSGLTMKNMLKDKLEDESGSFKHQPTTSSDGGNK
SVDASAAFCETKEVKTENESSDGLVDNKVVKSIPIANFKSPTSIFVTPKCPPTVKSAQIIGTKRPASSWIDTRSHQGKDGPDPHDDFLDTPLEKLRADLD
KTMEEEVQDLHIVLQNDKNMDPSSSDDETQDINLDRNLREQQMPVTIGGKRGFKYVEPVRKKAERQNLKGVECKQCKKFYDAVLPNNGGDGHKQNVRCEH
HDGVSRHRYKYVPPMTPEGFWNIGFESEM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52115 AtCOM1, ATGR1 gamma response gene 1 (.1) Potri.001G269700
[exp]
0 1 Pt-GR1.2
AT4G25610 C2H2ZnF C2H2-like zinc finger protein ... Potri.015G146300
[exp]
2.44 0.7266
AT5G11790 NDL2 N-MYC downregulated-like 2 (.1... Potri.018G054900
[exp]
5.29 0.6905
AT5G22320 Leucine-rich repeat (LRR) fami... Potri.004G199200
[exp]
7.74 0.7130
AT3G07660 Kinase-related protein of unkn... Potri.002G217000
[exp]
11.83 0.6681
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.003G083800
[exp]
13.03 0.6787
AT1G03080 kinase interacting (KIP1-like)... Potri.005G213400
[exp]
15.71 0.6514
AT1G17500 ATPase E1-E2 type family prote... Potri.001G197500
[exp]
18.97 0.6527
AT4G10790 UBX domain-containing protein ... Potri.003G145200
[exp]
27.27 0.6773
AT3G22430 unknown protein Potri.009G147201
[exp]
30.98 0.6151
AT3G15470 Transducin/WD40 repeat-like su... Potri.001G403400
[exp]
31.60 0.6588

Potri.001G269700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.