Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 468 / 6e-166 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT5G12940 446 / 2e-157 Leucine-rich repeat (LRR) family protein (.1) AT2G26380 191 / 3e-56 Leucine-rich repeat (LRR) family protein (.1) AT1G33590 186 / 2e-54 Leucine-rich repeat (LRR) family protein (.1) AT1G33600 175 / 3e-50 Leucine-rich repeat (LRR) family protein (.1) AT5G23400 175 / 1e-49 Leucine-rich repeat (LRR) family protein (.1) AT1G33610 170 / 2e-48 Leucine-rich repeat (LRR) family protein (.1) AT1G33670 167 / 2e-47 Leucine-rich repeat (LRR) family protein (.1) AT4G08850 169 / 3e-46 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G064300 [exp] 627 / 0 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G017500 [exp] 466 / 3e-165 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 461 / 2e-163 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.007G001000 [exp] 179 / 8e-51 AT5G23400 642 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.019G120733 [exp] 174 / 9e-48 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120700 [exp] 174 / 9e-48 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.013G098850 [exp] 168 / 9e-48 AT1G33590 629 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.016G049600 [exp] 161 / 1e-46 AT5G06860 354 / 3e-122 polygalacturonase inhibiting protein 1 (.1) Potri.006G058600 [exp] 157 / 6e-45 AT5G06860 383 / 1e-133 polygalacturonase inhibiting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037705 [exp] 522 / 0 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 507 / 0 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 499 / 2e-178 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10031824 [exp] 466 / 2e-165 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 439 / 3e-154 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 406 / 5e-143 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10031254 [exp] 238 / 4e-78 AT3G20820 269 / 2e-90 Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 161 / 2e-46 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10041064 [exp] 162 / 7e-46 AT1G33590 488 / 3e-171 Leucine-rich repeat (LRR) family protein (.1) Lus10023824 [exp] 159 / 1e-45 AT5G06860 366 / 1e-126 polygalacturonase inhibiting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.001G269800.1 pacid=42792971 polypeptide=Potri.001G269800.1.p locus=Potri.001G269800 ID=Potri.001G269800.1.v4.1 annot-version=v4.1 ATGAGTGTGTTACTACTCACAACAGTACTAACTCTCCTCTTCACCCTCATCTCCGTCACTTCCAGCTGCACTCCATCAGACCTAGCAGCGTTACAAGCCT TCAAGTCTACCCTCGATGAACCATACTTGGGCATCTTCAATACCTGGGCAGGCACCAACTGCTGCTCCAACTGGTACGGCATCAGCTGTGACCCCACCAC GGGCAGAGTCGCAGACATCAACCTGCGTGGTGAATCCGAAGACCCCATCTTCGAAAAAGCTGGCAGGTCAGGTTACATGACAGGTTCCATCAACCCTTCA ATATGCAAACTTGACAGACTCTCTACTTTCATTCTAGCAGACTGGAAAGGGGTTTCAGGTGAAATCCCTGAATGTGTTGTTTCTTTAAGTAATCTCCGAA TCTTGGATCTCATAGGTAACAAGATCTCTGGCAAGATTCCTGCTAATATCGGGAATCTACAGAGACTCACGGTTTTAAATCTTGCCGATAACGGACTCAC TGGAGAGATTCCTTCGTCACTTACAAAGTTGGAAAACATGAAGCATTTGGATCTTAGCAACAATATGCTGACTGGTCAGTTACCTTCTGATTTTGGTAAC TTGAAAATGCTTAGCCGTGCATTGTTGAGTAAAAACCAGCTAAGTGGAGCCATACCAAGCTCTATATCGGTTATGTATCGGCTTGCAGACTTGGATTTGT CTGTTAATCAGATTTCGGGTTGGCTACCAGACTGGATAGGCAGCATGCCGGTTCTTTCTACGCTTAACTTGGATAGTAACATGATTTCCGGTCCATTGCC ACAATCTTTGTTGAGTAGTACCGGTTTGGGGATGTTGAACTTGAGCAAGAATGCTATTGAAGGTAACATACCGGATGCTTTCGGGCCGAAAACTTACTTT ATGGCTCTTGATTTGTCGTACAACAATTTGAAGGGACCGATACCCAGTTCACTTTCGTCGGCGGCATATGTGGGGCATTTGGATTTAAGCCATAACTATC TCTGCGGACCAATTCCTGTTGGGTCACCATTTGATCACCTTGAAGCATCCTCATATAGTTTTAATGATTGTCTTTGCGGGAACCCATTGAGGGCTTGTTA A
AA sequence Show only first row Show all	>Potri.001G269800.1 pacid=42792971 polypeptide=Potri.001G269800.1.p locus=Potri.001G269800 ID=Potri.001G269800.1.v4.1 annot-version=v4.1 MSVLLLTTVLTLLFTLISVTSSCTPSDLAALQAFKSTLDEPYLGIFNTWAGTNCCSNWYGISCDPTTGRVADINLRGESEDPIFEKAGRSGYMTGSINPS ICKLDRLSTFILADWKGVSGEIPECVVSLSNLRILDLIGNKISGKIPANIGNLQRLTVLNLADNGLTGEIPSSLTKLENMKHLDLSNNMLTGQLPSDFGN LKMLSRALLSKNQLSGAIPSSISVMYRLADLDLSVNQISGWLPDWIGSMPVLSTLNLDSNMISGPLPQSLLSSTGLGMLNLSKNAIEGNIPDAFGPKTYF MALDLSYNNLKGPIPSSLSSAAYVGHLDLSHNYLCGPIPVGSPFDHLEASSYSFNDCLCGNPLRAC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G269800 [exp]	0	1
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.004G121100 [exp]	2.00	0.9443
AT4G22190			unknown protein		Potri.006G283300 [exp]	4.00	0.9123
AT3G18200			nodulin MtN21 /EamA-like trans...		Potri.015G042900 [exp]	5.91	0.9089
AT3G04830			Protein prenylyltransferase su...		Potri.013G038501 [exp]	7.48	0.9094
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.002G072200 [exp]	12.96	0.8948
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Potri.002G125300 [exp]	14.73	0.9061
AT2G45260			Plant protein of unknown funct...		Potri.014G067600 [exp]	15.49	0.9042
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	16.24	0.8974
AT5G66330			Leucine-rich repeat (LRR) fami...		Potri.007G016800 [exp]	18.43	0.8774
AT4G16450			unknown protein		Potri.016G009600 [exp]	22.24	0.8987

Compare expression of checked genes

Potri.001G269800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.