Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RAB11.15
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12160 379 / 2e-135 AtRABA4d ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) AT5G47960 376 / 2e-134 SMG1, AtRABA4c SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) AT5G65270 328 / 5e-115 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39990 306 / 2e-106 ATGB3, AtRABA4b, AtRab11G ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A 4B, GTP-BINDING PROTEIN 3, RAB GTPase homolog A4B (.1) AT4G18430 284 / 6e-98 AtRABA1e RAB GTPase homolog A1E (.1) AT5G60860 280 / 2e-96 AtRABA1f RAB GTPase homolog A1F (.1) AT2G33870 279 / 5e-96 ArRABA1h RAB GTPase homolog A1H (.1) AT1G07410 278 / 2e-95 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT3G15060 277 / 2e-95 AtRABA1g RAB GTPase homolog A1G (.1) AT1G16920 277 / 3e-95 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G050400 [exp] 352 / 8e-125 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.006G057700 [exp] 349 / 8e-124 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.007G096000 [exp] 337 / 5e-119 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G073000 [exp] 337 / 1e-118 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.010G197200 [exp] 286 / 8e-99 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.006G000300 [exp] 285 / 4e-98 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 284 / 7e-98 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.011G070300 [exp] 279 / 6e-96 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.011G061300 [exp] 278 / 1e-95 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002725 [exp] 352 / 1e-124 AT5G47960 334 / 1e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10016284 [exp] 352 / 2e-124 AT3G12160 386 / 2e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10014732 [exp] 350 / 1e-123 AT5G47960 332 / 6e-117 SMALL MOLECULAR WEIGHT G-PROTEIN 1, RAB GTPase homolog A4C (.1) Lus10012032 [exp] 346 / 3e-122 AT3G12160 379 / 1e-135 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021023 [exp] 354 / 1e-120 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10023829 [exp] 345 / 1e-119 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10000637 [exp] 334 / 2e-117 AT5G65270 395 / 8e-142 RAB GTPase homolog A4A (.1) Lus10023153 [exp] 332 / 1e-116 AT5G65270 396 / 3e-142 RAB GTPase homolog A4A (.1) Lus10035924 [exp] 329 / 2e-115 AT5G65270 404 / 3e-145 RAB GTPase homolog A4A (.1) Lus10025738 [exp] 328 / 2e-115 AT5G65270 404 / 4e-145 RAB GTPase homolog A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.001G270100.2 pacid=42789464 polypeptide=Potri.001G270100.2.p locus=Potri.001G270100 ID=Potri.001G270100.2.v4.1 annot-version=v4.1 ATGTCGTCGAGTTTGCAAGCGACTTACAACCAAAAGATAGATTATGTATTTAAAATAGTGTTAATAGGGGACTCGGCGGTTGGTAAATCGCAGCTATTGG CTCGGTTCGCTAGAAATGAATTCAGTTTGGATTCCAAAGCAACGATCGGTGTTGAGTTCCAAACCAAAACCCTTGTTATTGATCACAAAACTGTCAAAGC TCAGATTTGGGACACTGCTGGTCAAGAAAGGTATCGGGCTGTGACCAGTGCATATTATAGAGGTGCAGTGGGGGCAATGTTGGTGTATGACATAACCAAA CGTCAATCGTTTGATCATGTGGCCAAGTGGTTGGAGGAATTGCGGGATCATGCAGATAATAATATTGTTATCATGCTTATAGGCAACAAATCAGACCTGG GAACACTTCGAGCTGTACCTACTGAGGATGCCAAAGAATTTGCTCAGAAGGAAAACCTCTTTTTTATGGAGACATCAGCTCTAGAGGCCACTAATGTTGA ATCAGCTTTCCTATCAGTGCTGACCGAGATTTATCGAGTCATCAGCAAGAAGGCCCTCATAGCGAATGAACAAGAATCTGGGGGTAGCTCATCACTTCTG AAGGGAACCAACATTGTCGTTCCTGAACAAGAGCCAGTATCTGGAGGAAGGAGTTTCAGTTGTTGCGGGACATCATAG
AA sequence Show only first row Show all	>Potri.001G270100.2 pacid=42789464 polypeptide=Potri.001G270100.2.p locus=Potri.001G270100 ID=Potri.001G270100.2.v4.1 annot-version=v4.1 MSSSLQATYNQKIDYVFKIVLIGDSAVGKSQLLARFARNEFSLDSKATIGVEFQTKTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITK RQSFDHVAKWLEELRDHADNNIVIMLIGNKSDLGTLRAVPTEDAKEFAQKENLFFMETSALEATNVESAFLSVLTEIYRVISKKALIANEQESGGSSSLL KGTNIVVPEQEPVSGGRSFSCCGTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	0	1	RAB11.15
AT1G16210			unknown protein		Potri.009G140200 [exp]	1.00	0.8037
AT1G43130		LCV2	like COV 2 (.1)		Potri.002G065800 [exp]	2.44	0.7032
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Potri.019G068700 [exp]	3.00	0.6901
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Potri.002G162700 [exp]	4.00	0.7151	ATSTE24.2
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	6.78	0.7249
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	8.06	0.7118	ATFYPP3.2
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	11.40	0.6839
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	11.48	0.6808
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.005G228900 [exp]	11.53	0.7007	RER1.4
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	13.49	0.6762	ATTIM23.2

Compare expression of checked genes

Potri.001G270100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.