Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52130 127 / 3e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT3G07450 122 / 1e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G48490 45 / 5e-07 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT5G48485 39 / 8e-05 DIR1 DEFECTIVE IN INDUCED RESISTANCE 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G149900 [exp] 42 / 4e-06 AT5G48485 77 / 1e-19 DEFECTIVE IN INDUCED RESISTANCE 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.009G112553 [exp] 38 / 0.0002 AT5G48485 62 / 1e-13 DEFECTIVE IN INDUCED RESISTANCE 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.T125404 [exp] 38 / 0.0002 AT5G48485 62 / 1e-13 DEFECTIVE IN INDUCED RESISTANCE 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.002G251000 [exp] 36 / 0.001 AT5G48485 76 / 2e-19 DEFECTIVE IN INDUCED RESISTANCE 1, Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030541 [exp] 137 / 3e-43 AT3G07450 116 / 3e-35 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Lus10016582 [exp] 52 / 1e-09 AT5G55410 81 / 2e-21 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10032575 [exp] 37 / 0.0004 AT5G55410 73 / 2e-18 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10014681 [exp] 37 / 0.001 AT3G22600 126 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0482 [poplar] [flax] Prolamin PF14368 [poplar] [flax] LTP_2 Probable lipid transfer
Representative CDS sequence Show only first row Show all	>Potri.001G271000.2 pacid=42792090 polypeptide=Potri.001G271000.2.p locus=Potri.001G271000 ID=Potri.001G271000.2.v4.1 annot-version=v4.1 ATGGTGAAGCTTTGTGGTGTCAAGGTTCTGCCATTCCTGGTACTTGTGCTGATGTTGACAGTATTGGCGGAGCAAGGCCAAGCACATCCTTGTGGTAGCA CTTTCTTCTCTGCACTCATTCAAATGATACCTTGCAGGGCAGCAGTTGCTCCTTTTAGTCCTATCCAACCAAGTGAGCTCTGCTGCAGTGCTGTGAAAGC TCTCGGCCAGCCTTGCTTGTGTACTCTTGTCAATGGCCCTCCAATTTCTGGTGTTGACAGGAACATGGCCTTGCAGCTTCCTGACAAGTGTTCAGCCAAC TTTGAACCATGTGAAATTATGAAGAAGTAG
AA sequence Show only first row Show all	>Potri.001G271000.2 pacid=42792090 polypeptide=Potri.001G271000.2.p locus=Potri.001G271000 ID=Potri.001G271000.2.v4.1 annot-version=v4.1 MVKLCGVKVLPFLVLVLMLTVLAEQGQAHPCGSTFFSALIQMIPCRAAVAPFSPIQPSELCCSAVKALGQPCLCTLVNGPPISGVDRNMALQLPDKCSAN FEPCEIMKK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52130			Bifunctional inhibitor/lipid-t...		Potri.001G271000 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Potri.004G171100 [exp]	4.89	0.7843
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.019G091600 [exp]	9.21	0.8120
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000600 [exp]	16.43	0.6466
AT2G32835		RALFL16	RALF-like 16 (.1)		Potri.018G007800 [exp]	20.17	0.6133
AT1G07400			HSP20-like chaperones superfam...		Potri.013G108800 [exp]	23.79	0.5501
AT4G09190			F-box and associated interacti...		Potri.005G254500 [exp]	27.38	0.7121
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.010G227301 [exp]	39.94	0.6582
AT2G18500	OFP	ATOFP7, OFP7	ARABIDOPSIS THALIANA OVATE FAM...		Potri.005G125200 [exp]	40.64	0.6221
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.016G022600 [exp]	50.19	0.6902
AT1G78720			SecY protein transport family ...		Potri.011G114200 [exp]	125.33	0.5735

Compare expression of checked genes

Potri.001G271000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.