Plant FIBer expression Database

Potri.001G271100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G48020 593 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G248000
[exp]
49 / 2e-06 AT1G52820 280 / 6e-93 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.005G185000
[exp]
49 / 4e-06 AT2G36690 147 / 5e-41 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Potri.019G014454
[exp]
45 / 4e-05 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015707
[exp]
651 / 0 AT5G48020 590 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10037482
[exp]
645 / 0 AT5G48020 592 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10013132
[exp]
50 / 1e-06 AT1G52800 222 / 8e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Lus10025619
[exp]
42 / 0.0004 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2)
PFAM info
Representative CDS sequence
>Potri.001G271100.1 pacid=42792947 polypeptide=Potri.001G271100.1.p locus=Potri.001G271100 ID=Potri.001G271100.1.v4.1 annot-version=v4.1
ATGGAGATACCGGTGATTGATCTCTCGAGATATTTAGAGATCGCTGATAAACTGAGCACTGATCCAGTTATTTTATCGGGTCAAGTCGAAGAAGTCGGGT
CATGGCTCAGTGAATTGTGTAAAGAAGTGAGTCAGATCCTGAGAGAAACTGGAGCTTTGGTAGTTAAGGATCCGAGATGTACAGCGGAAGATAATGACAA
GTTTATTGACATGATGGAGAAGTACTTTGAAAGACCTAGAGAGTTCAAGTTACTACAAGAAAGATCTCACTTGCATTATCAGGTTGGAGTGACACCTGAG
GGAGTGGAAGTTCCAAGAAGCTTGGTTGATGAAGAGATGCAAAAGAAGTTAAAAGCAATGCCCAAAGAGTTCCAACCATCCACTCCTAGTGGACCGGATC
CTAAATGGCGATACATGTGGAGAGTAGGTCCTCGGCCATCAAACACTCGCTTTAAGGAACTTAATTCAGAACCTGTAATACCTGAAGGTTTTCCTGAATG
GAAAGACACTATGGACTCATGGGGTTGCAAAATGATCTCTGCAATAGAGGCTGTTGCTGAAATGGCAGCAATTGGTTTTGGTTTGTCCAAGGATGCATTT
ACTTCTCTTATGAAACAGGGACCTCATCTGCTTGCTCCAACAGGGAGTGATCTCAGCTGTTATGGTCAGGAAGGCACTGTCTTTGCAGGGTATCATTATG
ACCTTAACTTTCTAACAATTCATGGCAGAAGTAGATTTCCCGGTCTAAACATTTGGCTAAGGAATGGGCAAAAAATTGAAGTGAAGGTTCCTTCAGGATG
TCTTCTCATTCAGACAGGAAAGCAGATAGAGTGGTTGACTGCAGGAGAATGCATGGCTGGCATGCATGAAGTTGTTGTCACAAACAGGACAATAGATGCA
ATCAAATTAGCATCACAGCAAAATCGCAGCCTTTGGAGAGTTTCATCAACACTTTTTGCACACATAGCATCAGATGCCATGTTGAAGCCTTTAGGCCATT
TTGTTGAATCTCCATTGGCCAGCAAATATCCACTAATGTGCGCCGGGGAGTTTGTCGAACAGGAGCTTGCGGTGATCAACCTTAAAGGAAACAAAGGGGA
ATCATGA
AA sequence
>Potri.001G271100.1 pacid=42792947 polypeptide=Potri.001G271100.1.p locus=Potri.001G271100 ID=Potri.001G271100.1.v4.1 annot-version=v4.1
MEIPVIDLSRYLEIADKLSTDPVILSGQVEEVGSWLSELCKEVSQILRETGALVVKDPRCTAEDNDKFIDMMEKYFERPREFKLLQERSHLHYQVGVTPE
GVEVPRSLVDEEMQKKLKAMPKEFQPSTPSGPDPKWRYMWRVGPRPSNTRFKELNSEPVIPEGFPEWKDTMDSWGCKMISAIEAVAEMAAIGFGLSKDAF
TSLMKQGPHLLAPTGSDLSCYGQEGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGQKIEVKVPSGCLLIQTGKQIEWLTAGECMAGMHEVVVTNRTIDA
IKLASQQNRSLWRVSSTLFAHIASDAMLKPLGHFVESPLASKYPLMCAGEFVEQELAVINLKGNKGES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G48020 2-oxoglutarate (2OG) and Fe(II... Potri.001G271100
[exp]
0 1
AT1G01050 ATPPA1 pyrophosphorylase 1 (.1) Potri.002G181300
[exp]
2.00 0.9401
AT5G05010 clathrin adaptor complexes med... Potri.015G125400
[exp]
7.87 0.9395
AT3G49720 unknown protein Potri.001G288200
[exp]
8.94 0.9220
AT3G12110 ACT11 actin-11 (.1) Potri.010G204300
[exp]
9.94 0.9338 ACT5,Pt-PEAC14.3
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.013G123600
[exp]
10.00 0.9287 Pt-RAB11.8
AT5G58970 ATUCP2 uncoupling protein 2 (.1.2) Potri.001G247800
[exp]
11.18 0.9276 Pt-UCP2.1
AT1G65270 unknown protein Potri.019G055100
[exp]
12.96 0.9224
AT2G18990 TXND9 thioredoxin domain-containing ... Potri.009G092700
[exp]
15.81 0.9234
AT3G14290 PAE2 20S proteasome alpha subunit E... Potri.003G072500
[exp]
18.38 0.9149 PAE1.2
AT1G64650 Major facilitator superfamily ... Potri.003G145600
[exp]
18.52 0.9253

Potri.001G271100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.