Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52140 1842 / 0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) AT1G01320 310 / 1e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G15290 307 / 6e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G28080 307 / 7e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065300 [exp] 2417 / 0 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Potri.006G180100 [exp] 317 / 4e-88 AT4G28080 2109 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031000 [exp] 317 / 6e-88 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G102500 [exp] 312 / 1e-86 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G170900 [exp] 301 / 6e-83 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.014G098600 [exp] 301 / 6e-83 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037481 [exp] 2022 / 0 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10015708 [exp] 2016 / 0 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4) Lus10036604 [exp] 317 / 9e-88 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030259 [exp] 310 / 5e-86 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004009 [exp] 308 / 4e-85 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10035822 [exp] 303 / 1e-83 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05303 [poplar] [flax] DUF727 Protein of unknown function (DUF727) PF12807 [poplar] [flax] eIF3_p135 Translation initiation factor eIF3 subunit 135 PF13236 [poplar] [flax] CLU Clustered mitochondria CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat CL0020 [poplar] [flax] PF15044 [poplar] [flax] CLU_N Mitochondrial function, CLU-N-term
Representative CDS sequence Show only first row Show all	>Potri.001G271200.4 pacid=42789480 polypeptide=Potri.001G271200.4.p locus=Potri.001G271200 ID=Potri.001G271200.4.v4.1 annot-version=v4.1 ATGGCTGGGAAATCTAATAAAGGGAGGAATCGGAGAGGGTCCAATAACACAACAAATTCTTTGGAGCCAGTGGCATCATCGAATGCTCCTGTGAAGGATG ACATAACTGCTTCAGAAGCTGTTGTAGCTACTCTTAATGAAGTATCAGCTGGGAGTGAATCAACTAATGGCTCCTCAGAGATAAAGGAATCTGAAACAGC AAATTCTGCTAGTGAAGCAAAGCAAGGTGATCTTCATCTTTACCCTGTCTCTGTCAAATCTCAAAGTGGCGAGAAGCTTGAGCTACAATTGAACCCTGGA GATTCTGTCATGGATGTAAGACAATTCCTTCTTGATGCTCCTGAGACCTGTTTCTATACATGCTATGACTTGTTGCTGCACACGAAGGATGGTTCCACTC ATCAACTAGAAGATTATAATGAAATATCTGAAGTAGCTGACATTACTTCTGGTGGTTGCTCCTTGGAGATGGTCACCGCACCATATGATGATAGATCGAT CAGGGCACATGTTCACCACACAAGGGAATTACTTTCACTTTCTACACTTCATGCTTCATTATCAACATCCCTTGCTTTAGAGTATGAAACAGCACAAAAC AAAGCTCCGGGTTCAGATACTGGAAAAACAGAGGTCCCTGAGCTTGATGGGATGGGATTCATGGAGGATGTTGCCGGCTCGGTTGGTAAATTGTTATCAT TCCCAACAAAAGAAATCAAGTGTGTGGACAGTATTGTGTTTTCATCCTTCAATCCCCCTCCAAGCCATAGAAGGCTTGTTGGGGATTTGATTTATCTGGA TGCAGTAACATTGGAGGGTAACAGATATTGTGTTACTGGAACCATAAAGATGTTCTATGTCAATTCAAGCACAGGGAATGTCCTTGACCCAAGGCCCAGC AAAGCTACTTCTGAAGCAACAACCCTTGTTGGACTCCTGCAGAAAATCAGTCCTACGTTCAAAAGAGCTTTTCGTGAAATTTTGGAGCGTAAGGGCTCTG CACACCCTTTTGAAAATGTACAATCTCTCCTGCCACCGAATTCATGGCTAGGATTATATCCAGTTCCTGATCACAGACCTGATGCAGCCAGAGCGGAGGA TGCACTAACTCTTTCGTATGGTAGTGAGCTGATTGGCATGCAAAGAGATTGGAATGAGGAGTTGCAATCCTGTCGAGAGTTTCCCCACTCAACTCCTCAG GAAAGGATCTTGCGTGATAGAGCTCTCTACAAAGTGACTTCTGACTTTGTTGATGCAGCAATTAAAGGAGCTATTGGAGTCATCGGCAGATGTATTCCTC CCATAAATCCAACAGATCCAGAGTGCTTTCATATGTATGTTCACAACAATATATTCTTCAGTTTTGCTGTGGATTCAGACCTTGAACAGCTCTCCAAGAA ATGTAATTCAGATGCTAGTTCAAAGACTGAGAACACTAGTTCTTCAATTAAATCATCTGAAAAGGCCACTACTAATGGGGTGAAATGTGATGGATCAACC GCAGAAGTGATGGAATTGCCTCTCGAATCTTCTGAGCCACAGTTGGCTGAGAGTGAACAAGCTACATATGCTTCGGCAAATAATGATCTGAAAGGCACCA AATCCTACCAGGAAGCTGATGTCCCTGGTTTATATAATCTTGCCATGGCCATAATTGATTACAGGGGTCATAGAGTGGTAGCTCAGAGTGTCTTACCTGG CATTCTTCAAGGGGATAAATCAGACTCTCTGCTGTATGGTTCTGTTGATAATGGCAAGAAAATATGCTGGAATGAAGATTTTCATTCCAAGGTGGTTGAA GCTGCCAAACGCCTTCATCTAAAGGAACATACTGTCCTAGATGGATCTGGGAATGCTTTCAAATTAGCTGCACCAGTGGAATGCAAGGGCATTGTGGGTA GTGATGACAGGCATTATCTACTGGACTTGATGAGAGTAACTCCTCGTGATGCAAACTATACTAGACCTGGCTCGCGGTTTTGCATATTGAGACCAGAATT AATCACTGCCTTCTGTCAGGCCGAAGCTGTGGCAAGGTCGAAGAGTAGACCTAAATCTGAGGGAGGGGTTCAAGTGGCTGCTGATTCTACAGAAGTTGCT GGTGCTGATAAGCAAGTTAAATCTGAGGAAGCTGCAGTGCCCATCAACAATCAAGAGATAGCTAAAGAAGGGAAAGCTGACACTGTAGAAGAAAGTGCTC CTCCTCCTGCTGGAAGCTCTGAATCCCTTGAAGAAATACTTTTTAACCCTAATGTTTTTACTGAGTTCAAGTTGTCTGGGAATCCAGAGGAGATAGCAGT GGATGAGGAAAATGTGAAGAAAGTTAGTTCATATCTTGCAAATACTGTACTTCCAAAGTTCGTCCAAGATCTTTGCACACTTGAAGTCTCACCCATGGAT GGACAGACTCTTACTGAAGCACTACACGCTCATGGAATTAATGTTCGCTACATGGGAAAGGTTGCTGAAGGGACAAAACACTTACCTCATCTATGGGATC TTTGTTCCAATGAGATCATTGTCAGGTCTGCAAAGCACCTCCTCAAGGATCTCCTCAGGGACACAGATGATAATCATTTAGGGCCAGCAATCTCTCATTT TTACAATTGTTTCTTCGGAAGTTGTCAAGCTGTTGGTTTGAAAGTTTCAACTAATAATTCACCTTCAAGAGCAACAAAGAAAGAACAAGCTAGCAATCAT TCTTCAAGAAAATCCTCTAGGGGCCAAACAAGGTGGAAAGGAGCATCTGCAAGAAAGAACCAATCCTCATACATGAATGTTAGCTCAGAAACTCTATGGT CTGACCTTCAGGAACTTGCAAAGCTCAAATACGAGTTTGAGTTGCCAGAGGATGCGAGGTTACAAGTGAAGAAAGTCTCAGTTATACGTAACCTTTGCCA AAAGGTGGGCATCACCATTGCAGCTCGCAAATATGATCTCCATACTGCAATGCCTTTCCAAATGTCAGATATCTTGAATCTCCAACCTGTGGTGAAGCAT TCAGTTCCTCTATGTTCAGAAGCCAAGGATCTTGTGGAAACAGGAAAAGTTCAACTGGCTGAGGGGATGCTTAGTGAAGCCTACACATTATTTTCTGAGG CATTTTCCATTCTTCAACAGGTGACTGGTCCAATGCATCGTGAGGTTGCTAACTGTTGTCGGTACCTGGCCATGGTTCTGTACCATGCTGGTGATATGGC TGGAGCAATCATCCAACAGCACAAGGAGTTGATCATAAATGAACGTTGCCTGGGATTAGACCACCCTGATACTGCCCACAGTTACGGAAACATGGCTCTC TTTTACCATGGACTGAACCAAACAGAACTTGCACTGCGGCACATGTCTCGTGCGCTGCTCTTATTGAGTTTGTCATCTGGCCCAGATCACCCTGATGTGG CTGCGACCTTCATAAATGTTGCAATGATGTATCAGGACATTGGAAAGATGAACACGGCTCTTCGCTATCTGCAAGAGGCCTTGAAAAAGAATGAGAGGCT TTTAGGAGAGGAGCATATTCAAACTGCTGTATGCTACCATGCTCTTGCAATCGCATTTAACTGTATGGGCGCATTCAAGCTATCACACCAGCATGAGAAG AAAACCTACGACATACTTGTCAAACAACTTGGTGAGGAGGACTCAAGGACACGAGATTCCCAAAACTGGATGAGCACATTTAAGGCACGAGAACTGCAGA TGAATGCGCAGAAGCAGAAAGGTCAGACATTGAATGCAACTTCTTCTCAAAAGGCGATAGATATATTGAAGGCTAATCCTGACCTGCTGCATGCATTCCA AGCTGCTGCTGCTGCTGGAGGATCTGGATCTGGGAGCTCTAGCAGTTCCATTAACAAATCCCTTAATGCAGCAATAGTTGGTGAAGCCCTTCCACGAGGG AGGGGAGTAGATGAACGAGCTGCTCGTGCAGCAGCAGAAGCTAGGAAGAAAGCAGCTGCTAGGGGGCTCTTGATTCGCCCGCATGGTGTTCCTGTACAAG CTTTGCCACCATTCACTCAGCTCCTCAACATCATTAACTCAGGGGCGACTCCAGATTCCATCAACAACGATGAAGCAGGTGGAGTGAACAATGAAGCTAA TGGACAGTCTTCTAATGACCCAGTAGATAAACAAAAAGATCAAACATCAGGGAAAGATCAGGCTCCTATTGGGTTGGGCAAAGGCTTAAAATCATTAGAT GCCAAGAAAGAGAAAGCAAAGGCCAAAGTTGCAGCTTGA
AA sequence Show only first row Show all	>Potri.001G271200.4 pacid=42789480 polypeptide=Potri.001G271200.4.p locus=Potri.001G271200 ID=Potri.001G271200.4.v4.1 annot-version=v4.1 MAGKSNKGRNRRGSNNTTNSLEPVASSNAPVKDDITASEAVVATLNEVSAGSESTNGSSEIKESETANSASEAKQGDLHLYPVSVKSQSGEKLELQLNPG DSVMDVRQFLLDAPETCFYTCYDLLLHTKDGSTHQLEDYNEISEVADITSGGCSLEMVTAPYDDRSIRAHVHHTRELLSLSTLHASLSTSLALEYETAQN KAPGSDTGKTEVPELDGMGFMEDVAGSVGKLLSFPTKEIKCVDSIVFSSFNPPPSHRRLVGDLIYLDAVTLEGNRYCVTGTIKMFYVNSSTGNVLDPRPS KATSEATTLVGLLQKISPTFKRAFREILERKGSAHPFENVQSLLPPNSWLGLYPVPDHRPDAARAEDALTLSYGSELIGMQRDWNEELQSCREFPHSTPQ ERILRDRALYKVTSDFVDAAIKGAIGVIGRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLEQLSKKCNSDASSKTENTSSSIKSSEKATTNGVKCDGST AEVMELPLESSEPQLAESEQATYASANNDLKGTKSYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKICWNEDFHSKVVE AAKRLHLKEHTVLDGSGNAFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTRPGSRFCILRPELITAFCQAEAVARSKSRPKSEGGVQVAADSTEVA GADKQVKSEEAAVPINNQEIAKEGKADTVEESAPPPAGSSESLEEILFNPNVFTEFKLSGNPEEIAVDEENVKKVSSYLANTVLPKFVQDLCTLEVSPMD GQTLTEALHAHGINVRYMGKVAEGTKHLPHLWDLCSNEIIVRSAKHLLKDLLRDTDDNHLGPAISHFYNCFFGSCQAVGLKVSTNNSPSRATKKEQASNH SSRKSSRGQTRWKGASARKNQSSYMNVSSETLWSDLQELAKLKYEFELPEDARLQVKKVSVIRNLCQKVGITIAARKYDLHTAMPFQMSDILNLQPVVKH SVPLCSEAKDLVETGKVQLAEGMLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIIQQHKELIINERCLGLDHPDTAHSYGNMAL FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMNTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK KTYDILVKQLGEEDSRTRDSQNWMSTFKARELQMNAQKQKGQTLNATSSQKAIDILKANPDLLHAFQAAAAAGGSGSGSSSSSINKSLNAAIVGEALPRG RGVDERAARAAAEARKKAAARGLLIRPHGVPVQALPPFTQLLNIINSGATPDSINNDEAGGVNNEANGQSSNDPVDKQKDQTSGKDQAPIGLGKGLKSLD AKKEKAKAKVAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.001G271200 [exp]	0	1
AT3G52140			tetratricopeptide repeat (TPR)...		Potri.009G065300 [exp]	1.00	0.8979
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.009G034900 [exp]	1.41	0.8962
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Potri.007G092200 [exp]	1.73	0.8816
AT5G48120			ARM repeat superfamily protein...		Potri.003G048800 [exp]	3.46	0.8408
AT1G80880			Tetratricopeptide repeat (TPR)...		Potri.001G043500 [exp]	4.47	0.8760
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.002G047200 [exp]	6.48	0.8346
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G178000 [exp]	8.48	0.8494
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Potri.017G128300 [exp]	9.53	0.8515
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	10.48	0.8436
AT3G10650		AtNUP1	unknown protein		Potri.010G244700 [exp]	11.40	0.8582

Compare expression of checked genes

Potri.001G271200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.