Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48060 1481 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G06850 1329 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G57880 1205 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 1184 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT4G11610 1178 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G12970 1172 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G22610 1029 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 986 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 907 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT3G61300 897 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G065600 [exp] 1575 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 1355 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058700 [exp] 1342 / 0 AT5G06850 1321 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 1221 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 1218 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 1186 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.002G158000 [exp] 1182 / 0 AT4G11610 1400 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 1166 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 1161 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023823 [exp] 1323 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 1321 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 1210 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 1209 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 1178 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 1088 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 997 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10037479 [exp] 952 / 0 AT5G48060 866 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 914 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 838 / 0 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.001G271400.1 pacid=42793033 polypeptide=Potri.001G271400.1.p locus=Potri.001G271400 ID=Potri.001G271400.1.v4.1 annot-version=v4.1 ATGAAGCTAGTGGTAGAAATAGTAGATGCTCATGACCTTATGCCCAAAGACGGAAAAGGTTCAGCTAGCCCATTTGTAGAAGTTGATTTCCAAAACCAAC TAAGCAAAACCAAAACCATCCCGAAGAACCTCAACCCTGTTTGGAACCAAAAACTTCTCTTTGATCTAGATGAAACCAAAAACCGCCATCACCAATCCAT TGAGGTTTCCGTTTACAACGAGAGGAGACCAATTCCTGGCCGAAACTTCCTTGGTAGAACTAGAATTCCATGTTCAAATGTTGTCAAGAAAGGTGACGAA GTTTATCAAACTTTCCAATTAGAAAAGAAGTGGTTTTTCTCAACTGTCAAAGGTGAAATTGGCCTTAAAATCTATACCTCACTAGAATCGAAAGCTCCTC CCCTTCCCTCTCCATCACAACCTCCACCATCTAATATACCACCAGAAACCTCTGCTTCTAGTTCTTCTCTCCCCACTATTACTCATATTGCAGAAAATAC CGGTCGTGATTGCAGAACACTTGCTGCTCTTCCTAGAGCAGAGATTCTTCATACTTCTGAAGCTATTACAGAACAGCCTGGGAAAAAGATTTCTGCAATT TCTGAAACTAGTGGCGGTTTTCCTGCAAAAGAGCCAAAGAACAGTAATAAAGAACCTACCAAAATAAGAGCTGATACCACTCAACACGTACACAAACACC AAGTCCTGCAGAAAACCAGCCAATCGGTGGAGAAACTACCAAACGGTGCCCCTTACACAATGCATGCTGCTAATCCATCAGCTCATTCAAGTGATCTAGA TGACTTCAACTTGAAGGACACCGACCCCCAGTTAGGGGAACGGTGGCCAAGTGGTGGAGCATACGGGGGAAGAGGATGGATGAATGGCGAGAGATATGCA AGCACATATGACCTTGTTGAGCAGGTATCCTACCTATATGTTCGAATTGTTAAAGCCAAAGATCTTCCTTCGAGCTCCATCACTGCCAGCTGCGATCCTT ATGTGGAGGTAAAGCTTGGGAACTACAAGGGTAGGACAAGGCATTTCGAGAAGAAAATGAACCCAGAATGGAACCAGGTCTTTGCTTTCTCAAAAGACCG AATACAGTCATCGGTGCTGGAAGTTTTTGTCAAAGACAAAGAAATGGTGGGGAGAGACGATTATCTTGGAAGGGTAGTTTTCGATTTGAATGAAGTTCCA ACTAGAGTTCCACCAGACAGTCCACTGGCTCCTCAATGGTATAGACTGGAGGACCGACGAGGAGAAGGGAAGGTGAGAGGAGAGATTATGCTTGCGGTTT GGATGGGAACGCAGGCAGATGAAGCCTTTCCAGATGCATGGCACTCTGATGCTGCCTCAGTATATGGAGAGGGTGTACTCAACATCCGCTCAAAAGTCTA TGTATCACCAAAATTGTGGTACCTAAGAGTGAATGTGATTGAAGCTCAAGACGTGGTGCCAAGTGACAGAAGCCGCCTCCCAGAAGTATTTGTAAAAGTT CAAGTTGGAAATCAAGTTCTCAGGACAAAGATTCACCCCACTAGAACAGCTAACCCACTCTGGAATGAAGATTTGGTGTTTGTAGTGGCTGAGCCTTTTG AGGAGCAGCTCTTTCTAACTGTTGAGGATCGATTGACTCCTCTGAAAGATGATGTCTTGGGGAAAATAAGCGTGCCCCTCAACATTTTTGAGAAGCGACT AGATCACCGGCCTGTTCATTCTCGCTGGTTCAATTTAGAAAAATATGGTTTTGGTGTTTTGGAAGCTGACAGGAGGAAAGAGCTTAAATTCTCAAGCCGG ATTCATCTAAGAGTTTGTCTTGAAGGAGGATACCATGTAATGGATGAATCGACAATGTACATCAGCGATCAAAGACCAACAGCAAGGCAGCTCTGGAAGC AGCCGGTTGGGATATTAGAAGTGGGAATCTTGGGTGCACAAGGTCTTCTTCCAATGAAGATGAAAGATGGCCGAGGGAGTACAGATGCCTATTGTGTGGC TAAATACGGCCAGAAATGGGTTCGCACAAGAACAATCGTTGACACTTTCAATCCAAAATGGAATGAGCAATACACTTGGGAAGTTTACGATCCCTGCACA GTGATAACATTGGGAGTTTTCGACAACTGCCATTTAGGAGGAGGCGAGAAACCAACTGCTGCAAATGCAGCACGAGATTTAAGAATTGGAAAGGTAAGAA TTAGACTGTCAACGCTAGAAGCTTATCGGACTTACACTCATTCTTATCCACTTCTTGTTCTGCACCCACTCGGTGTGAAGAAAATGGGGGAGCTCCAACT GGCAGTTAGATTCACCACCCTCTCTCTAGCTAACATGATATATGTCTATGGGCATCCTTTGCTGCCTAAAATGCACTACTTGCATCCATTCACAGTCAAT CAGGTAGACAATTTGAGATACCAAGCCATGAATATCGTAGCTGTGAGGCTCGGCCGAGCCGAACCACCTCTGAGAAAAGAGGTGGTGGAGTACATGTTAG ATGTGGATTCTCACACGTGGAGTATGAGAAGAAGCAAAGCCAACTTCTTCAGAATCATGTCACTTGTTTCTGGTTTGTTTTCTATGAGCCATTGGTTTGG GGACATTTGCCAATGGAGGAACCCAATTACATCAGTGTTGGTTCATATCCTCTTTCTTATATTGATTTGGTATCCAGAATTGATCCTCCCAACTCTCTTT CTCTACATGTTCCTCATTGGAATATGGAACTACAGGTTCCGACCAAGGCATCCACCTCACATGGACACAAAACTTTCATGGGCAGAAGCAGTGCACCCAG ATGAACTTGATGAAGAATTTGACACATTCCCAACTTCTAAGTCCCATGATATAGTTCGAATGAGGTATGACAGGCTTAGAGGAGTTGCAGGAAGGATCCA AACTGTAGTGGGCGACATAGCAACACAGGGGGAGAGATTTCAGTCTCTACTCAGTTGGAGAGATCCAAGAGCAACCAGTCTTTTCATTGTGTTCTGTCTT TGTGCAGCTGTGGTGCTCTATGTGACTCCTTTCAGGGTGGTGGCTCTAGTTGCTGGTTTGTATTATTTGCGGCATCCAAGGTTTAGAAGCAAGCTACCTT CTGTGCCCAGCAATTTCTTCAAGAGATTGCCAGCTCGAACGGACAGCTTGCTGTAA
AA sequence Show only first row Show all	>Potri.001G271400.1 pacid=42793033 polypeptide=Potri.001G271400.1.p locus=Potri.001G271400 ID=Potri.001G271400.1.v4.1 annot-version=v4.1 MKLVVEIVDAHDLMPKDGKGSASPFVEVDFQNQLSKTKTIPKNLNPVWNQKLLFDLDETKNRHHQSIEVSVYNERRPIPGRNFLGRTRIPCSNVVKKGDE VYQTFQLEKKWFFSTVKGEIGLKIYTSLESKAPPLPSPSQPPPSNIPPETSASSSSLPTITHIAENTGRDCRTLAALPRAEILHTSEAITEQPGKKISAI SETSGGFPAKEPKNSNKEPTKIRADTTQHVHKHQVLQKTSQSVEKLPNGAPYTMHAANPSAHSSDLDDFNLKDTDPQLGERWPSGGAYGGRGWMNGERYA STYDLVEQVSYLYVRIVKAKDLPSSSITASCDPYVEVKLGNYKGRTRHFEKKMNPEWNQVFAFSKDRIQSSVLEVFVKDKEMVGRDDYLGRVVFDLNEVP TRVPPDSPLAPQWYRLEDRRGEGKVRGEIMLAVWMGTQADEAFPDAWHSDAASVYGEGVLNIRSKVYVSPKLWYLRVNVIEAQDVVPSDRSRLPEVFVKV QVGNQVLRTKIHPTRTANPLWNEDLVFVVAEPFEEQLFLTVEDRLTPLKDDVLGKISVPLNIFEKRLDHRPVHSRWFNLEKYGFGVLEADRRKELKFSSR IHLRVCLEGGYHVMDESTMYISDQRPTARQLWKQPVGILEVGILGAQGLLPMKMKDGRGSTDAYCVAKYGQKWVRTRTIVDTFNPKWNEQYTWEVYDPCT VITLGVFDNCHLGGGEKPTAANAARDLRIGKVRIRLSTLEAYRTYTHSYPLLVLHPLGVKKMGELQLAVRFTTLSLANMIYVYGHPLLPKMHYLHPFTVN QVDNLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHTWSMRRSKANFFRIMSLVSGLFSMSHWFGDICQWRNPITSVLVHILFLILIWYPELILPTLF LYMFLIGIWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSKSHDIVRMRYDRLRGVAGRIQTVVGDIATQGERFQSLLSWRDPRATSLFIVFCL CAAVVLYVTPFRVVALVAGLYYLRHPRFRSKLPSVPSNFFKRLPARTDSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48060			C2 calcium/lipid-binding plant...		Potri.001G271400 [exp]	0	1
AT3G24255			RNA-directed DNA polymerase (r...		Potri.004G185050 [exp]	2.82	0.9056
					Potri.012G100450 [exp]	5.47	0.8667
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.018G111400 [exp]	5.74	0.8496
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242100 [exp]	7.07	0.8508
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004500 [exp]	7.34	0.8540
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.009G106200 [exp]	9.00	0.8234	SQN.1
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.015G143500 [exp]	9.27	0.7753
AT4G36750			Quinone reductase family prote...		Potri.004G151100 [exp]	9.38	0.8286
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	10.58	0.8733
					Potri.001G308800 [exp]	16.43	0.7989

Compare expression of checked genes

Potri.001G271400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.