Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MPK3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45640 640 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT2G43790 580 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT4G01370 534 / 0 ATMPK4 MAP kinase 4 (.1) AT4G11330 518 / 0 ATMPK5 MAP kinase 5 (.1) AT3G59790 515 / 0 ATMPK10 MAP kinase 10 (.1) AT1G07880 510 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT1G01560 508 / 0 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 498 / 1e-177 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G10210 417 / 5e-146 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 415 / 6e-145 ATMPK7 MAP kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066100 [exp] 725 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.007G139800 [exp] 603 / 0 AT2G43790 684 / 0.0 MAP kinase 6 (.1) Potri.017G010200 [exp] 595 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.002G162500 [exp] 535 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.003G131800 [exp] 528 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 527 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 523 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.005G231100 [exp] 429 / 2e-150 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 429 / 3e-150 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036136 [exp] 676 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 666 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10027091 [exp] 598 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10008339 [exp] 598 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10023339 [exp] 570 / 0 AT3G45640 565 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10038472 [exp] 541 / 0 AT3G45640 535 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10007921 [exp] 538 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10024668 [exp] 524 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 524 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 519 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.001G271700.1 pacid=42791537 polypeptide=Potri.001G271700.1.p locus=Potri.001G271700 ID=Potri.001G271700.1.v4.1 annot-version=v4.1 ATGGCAAATTACGCACCGGGAAATGGTGACTTCCCGGCGATTCCGACTAACGGGGGCCAGTTCATTCAACACAACATTTTCGGTAATCTTTTTGAAATCA CCTCGAAATATCGACCTCCGATCACTCCGATTGGCCGTGGCGCCTACGGCATCGTCTGCTCGGTGTTGAACTCGGAGACGAACGAGAAGGTGGCGATAAA GAAGATAGCCAACGCTTTTGATAATTATATGGACGCCAAGCGCACCCTTCGTGAGATCAAACTGCTTCGCCATCTGGATCACGAAAACGTCATTGGTATC AGAGATGTCATTCCTCCACCTCTACGCAGAGAATTTACTGATGTCTACATTGCCACGGAGCTCATGGACACTGATCTTCACCATATTGTTCGTTCCAACC AGGGTTTGTCAGAGGAGCATTGCCAGTACTTCTTGTACCAGACTCTTCGAGGATTGAAATACATACACTCTGCTAATGTTATTCATAGAGATCTGAAACC CAGCAATTTATTGGTAAATGCAAATTGTGACTTGAAGATCTGCGATTTTGGTTTAGCTCGGCCAACTTCAGAGAATGAGTTTATGACAGAGTATGTTGTT ACCAGATGGTATCGTGCACCTGAGTTATTGCTCAACTCCTCAGACTATACTGCTGCGATAGATGTGTGGTCTGTAGGTTGCGTCTTTATGGAGCTTATGA ATAGAAAACCTCTATTTCCAGGCAAAGATAATGTGCATCAGATGCGCTTATTGACAGAGCTTCTTGGCACACCAACTGAATCTGATCTTGGGTTTGTCCG GAATGAGGATGCAAGAAGATACATCCGGCAACTCGATTCGCATCCTCATCGGTCGTTAGCTGAACTTTTCCCACTTTTTCAACCGCTGGCCATTGATCTT GTAGATAAAATGCTGACATTTGATCCCACTAGAAGAATTACTGTTGAAGAAGCATTGGCTCATCCATACCTTGCAAGGTTACATGACATAGCAGATGAAC CAGTCTGCCCAGAGCCTTTCTCCTTTGAGTTTGAGCAACAACCCTTGACAGAAGAGCAAATGAAGGATATGGTCTATGAGGAGGCTATAGCATTCAATCC AGAATATGCATAA
AA sequence Show only first row Show all	>Potri.001G271700.1 pacid=42791537 polypeptide=Potri.001G271700.1.p locus=Potri.001G271700 ID=Potri.001G271700.1.v4.1 annot-version=v4.1 MANYAPGNGDFPAIPTNGGQFIQHNIFGNLFEITSKYRPPITPIGRGAYGIVCSVLNSETNEKVAIKKIANAFDNYMDAKRTLREIKLLRHLDHENVIGI RDVIPPPLRREFTDVYIATELMDTDLHHIVRSNQGLSEEHCQYFLYQTLRGLKYIHSANVIHRDLKPSNLLVNANCDLKICDFGLARPTSENEFMTEYVV TRWYRAPELLLNSSDYTAAIDVWSVGCVFMELMNRKPLFPGKDNVHQMRLLTELLGTPTESDLGFVRNEDARRYIRQLDSHPHRSLAELFPLFQPLAIDL VDKMLTFDPTRRITVEEALAHPYLARLHDIADEPVCPEPFSFEFEQQPLTEEQMKDMVYEEAIAFNPEYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Potri.001G271700 [exp]	0	1	MPK3.1
AT3G61260			Remorin family protein (.1)		Potri.014G081300 [exp]	1.41	0.9033
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	3.16	0.9026
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	6.00	0.8782
AT2G38610			RNA-binding KH domain-containi...		Potri.013G159800 [exp]	6.32	0.8710
AT1G78230			Outer arm dynein light chain 1...		Potri.002G097800 [exp]	6.32	0.8816
AT1G20696		NFD3, NFD03, HM...	high mobility group B3 (.1.2.3...		Potri.005G101400 [exp]	9.48	0.8794	HMGB915
AT4G39840			unknown protein		Potri.007G091900 [exp]	12.08	0.8193
AT3G02468		CPuORF9	conserved peptide upstream ope...		Potri.004G106750 [exp]	14.49	0.8587
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	14.79	0.8952
AT1G76920			F-box family protein (.1)		Potri.002G069900 [exp]	14.96	0.8470

Compare expression of checked genes

Potri.001G271700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.