Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26960 357 / 7e-121 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 70 / 7e-13 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G27150 57 / 1e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 56 / 3e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G22030 55 / 5e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 55 / 6e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G63220 53 / 2e-07 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G16250 51 / 7e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT4G03030 51 / 1e-06 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 50 / 2e-06 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066500 [exp] 563 / 0 AT5G26960 365 / 7e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G059200 [exp] 71 / 3e-13 AT1G67480 480 / 2e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.013G104300 [exp] 69 / 2e-12 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G176000 [exp] 67 / 7e-12 AT1G67480 487 / 3e-173 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.001G331500 [exp] 55 / 7e-08 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 53 / 2e-07 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.011G046100 [exp] 52 / 3e-07 AT1G16250 89 / 3e-19 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.002G050600 [exp] 52 / 5e-07 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.005G211700 [exp] 51 / 6e-07 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022061 [exp] 58 / 4e-09 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10023608 [exp] 56 / 2e-08 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018307 [exp] 56 / 4e-08 AT5G01660 276 / 3e-82 unknown protein Lus10013899 [exp] 55 / 6e-08 AT1G16250 523 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 52 / 4e-07 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 52 / 5e-07 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10036735 [exp] 52 / 5e-07 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10002112 [exp] 49 / 3e-06 AT1G16250 525 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017821 [exp] 49 / 4e-06 AT3G61350 328 / 3e-110 SKP1 interacting partner 4 (.1) Lus10037196 [exp] 49 / 5e-06 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.001G271900.1 pacid=42788430 polypeptide=Potri.001G271900.1.p locus=Potri.001G271900 ID=Potri.001G271900.1.v4.1 annot-version=v4.1 ATGCCAGAAAGTTGCAATTCTCGCCACTTCTCATGGCTAATGAAATCTTGCTTCCCAAACCCACAAGACCCCACCTCCAAACCCCTCTCTCCAAACCCTA TAATCACCATCTCCATCCCCACCACCACCACCCTCTCTTCTCTTTCAGATGACCTTCTCTTAGAATGCCTCTCTAGAGTCCCTTCCTCTTCCCTCCCTTC CATTTCCCTCGTTTGCCGCCGCTGGTCCCTCCTCCTTCACTCTCCTTCTTTTATCTACCTACGCCGTCTCCACCATCTCATCCACCCCACCATCTTCACT CTGTCCGCCCCTTTTGCCGCCTCCCTCCGACTACCAGATGACAATGATGCCGATACCAATGACCCTTTGTGGAAAGTTGCTTCGTGTCTTCCTTTTCCTG TAGCCTCATTGGATAGCCTTTCTCACGCTCGTCTGTCTGCAATTGGATCAAGGATCTATATCATTGGACGAAACGAAACGTTTTGTTATGATGTCTGGAG TGGCATAATTACTTCAAGATCTTCAATGATTTACCCTAGAAAGAAATTTGCTACTGCAGTGCTTTCGGGTAAAATTTATGTCGCAGGAGGCGGGTCACGA GCGGGGGCAGCATTGGAGGAGTATGACCCAGACACTGATACTTGGCGCGTGGTGGCACAGGCGACAAGGAGGCGATATGGTTGCATTGGGGCTGCCGTTG ATGGCGTGTTTTATGTGATTGGAGGACTTAAAATAGGTGCCGCCTTGGAGAATGAAGTCACACGCGCCGCTTCAGCAGGGGCAGAGGCTTATGTGTATGC CAGTTCGATGGATTTGTTTGATGTGGAGTCGCGTGCGTGGTTAAGGAGTAGGGCCGTTCCTGGTGGCGGGTGTGTGGTGGCTGCATGTGCGGTGGCAGGG TATGTTTATATTTTAACTAGCCACGCGGTGGAGTTATCATTCTGTCGCTTTGATGCCCGTAGGCGGGGTGGCGGCAGCAACGGTAAGGGATTTGGAGAGT GGTGTAGGATAAAGAGCCCACCATTGCCAGCACAAGTTAGGCTGGACAGTACAGTGAGGTTTAGTTGCGTAGGAGTCGAAAACAAGGTGGTGTTAATTCA AGTCAGTGGGTGCATTGATGATTTGTTAAGGAGAAGTGGAAGGAATGTTCGGGGATTGAAAGAGGGATTGGTATTGGTTTATGACTGTGTTAGTGGGGTG TGGAGTAGAGGGCCTCATTTGCCGGAGGTGATTCGACGCGCCACCTGTGTGACTGTGGAATGCTAG
AA sequence Show only first row Show all	>Potri.001G271900.1 pacid=42788430 polypeptide=Potri.001G271900.1.p locus=Potri.001G271900 ID=Potri.001G271900.1.v4.1 annot-version=v4.1 MPESCNSRHFSWLMKSCFPNPQDPTSKPLSPNPIITISIPTTTTLSSLSDDLLLECLSRVPSSSLPSISLVCRRWSLLLHSPSFIYLRRLHHLIHPTIFT LSAPFAASLRLPDDNDADTNDPLWKVASCLPFPVASLDSLSHARLSAIGSRIYIIGRNETFCYDVWSGIITSRSSMIYPRKKFATAVLSGKIYVAGGGSR AGAALEEYDPDTDTWRVVAQATRRRYGCIGAAVDGVFYVIGGLKIGAALENEVTRAASAGAEAYVYASSMDLFDVESRAWLRSRAVPGGGCVVAACAVAG YVYILTSHAVELSFCRFDARRRGGGSNGKGFGEWCRIKSPPLPAQVRLDSTVRFSCVGVENKVVLIQVSGCIDDLLRRSGRNVRGLKEGLVLVYDCVSGV WSRGPHLPEVIRRATCVTVEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26960			Galactose oxidase/kelch repeat...		Potri.001G271900 [exp]	0	1
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	3.31	0.7567
AT2G33570			Domain of unknown function (DU...		Potri.005G258900 [exp]	11.35	0.7298
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	13.41	0.7192
AT1G54990		RGR1, AXR4	REDUCED ROOT GRAVITROPISM 1, R...		Potri.013G021500 [exp]	20.39	0.6184
AT5G01090			Concanavalin A-like lectin fam...		Potri.010G194700 [exp]	21.44	0.7280
AT1G78060			Glycosyl hydrolase family prot...		Potri.002G094000 [exp]	28.54	0.7243
AT3G27230			S-adenosyl-L-methionine-depend...		Potri.005G236600 [exp]	44.11	0.7166	Pt-RAD3.1
AT2G35470			unknown protein		Potri.003G095500 [exp]	45.38	0.7059
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.006G179100 [exp]	45.82	0.6712
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.015G098900 [exp]	51.38	0.6314

Compare expression of checked genes

Potri.001G271900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.