Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26770 773 / 0 SCAB1 stomatal closure-related actin binding protein 1, plectin-related (.1.2) AT2G40820 520 / 0 unknown protein AT3G56480 511 / 6e-179 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066800 [exp] 880 / 0 AT2G26770 785 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Potri.016G033100 [exp] 580 / 0 AT2G40820 687 / 0.0 unknown protein Potri.006G035300 [exp] 576 / 0 AT2G40820 681 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036073 [exp] 762 / 0 AT2G26770 783 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Lus10026809 [exp] 727 / 0 AT2G26770 745 / 0.0 stomatal closure-related actin binding protein 1, plectin-related (.1.2) Lus10038998 [exp] 514 / 5e-180 AT2G40820 611 / 0.0 unknown protein Lus10027293 [exp] 508 / 6e-178 AT2G40820 614 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF16709 [poplar] [flax] SCAB-Ig Ig domain of plant-specific actin-binding protein
Representative CDS sequence Show only first row Show all	>Potri.001G272300.3 pacid=42792661 polypeptide=Potri.001G272300.3.p locus=Potri.001G272300 ID=Potri.001G272300.3.v4.1 annot-version=v4.1 ATGACTAGGGTAACCCGTGATTTTGGAGATACTATGCAAAAAGATGCTGTCCTAGCTGTATCAGCAGATGTTGCATTTGCTTCTAGTCGGTTTCCTAATT ACAAAATTGGAGCTACCAATCAGATTCTGGATGCAAAAGATGACCCCAAAGTATTGTCCATGAAGGAGGTTGTGGCACGCGAGACTGCTTTGCTTTTGGA ACAGCAGAAACGCCTCTCTGTCCGTGACCTTGCCAGTAAATTTGAAAAGGGATTGGCTGCTGCTGCTAAGTTGTCAGAAGAGGCTAGGCTCAGAGAGGCT GCTTCATTAGAGAAACATGTCCTATTGAAGAAGCTTAGGGATGCGCTAGAATCATTAAAAGGACGTGTGGCAGGTAGAAACAAGGATGACGTGGAGGAAG CTATTGCCATGGTGGAAGCTTTAGCGGTTCAGCTGACTCAGAGGGAAGGAGAGTTGATTCAAGAAAAAGCAGAAGTAAAGAAGCTAGCAAATTTTCTTAA GCAGGCTTCAGAAGATGCCAAGAAACTTGTCGATGAGGAAAGAGCTTATGCTCGTGCTGAAATTGAGAGTGCCAGAGCGACAGTTCAGAGGGTGGAAGAA GCTCTTCAAGAACATGAACGAATGTCTCGAGCTTTGGGGAAGCAGGACTTGGAAGAATTAATGAAGGAGGTTCAAGAGGCTAGAAGGATCAAAATGCTGC ATCAGCCAAGCAAGGTTATGGACATGGAACATGAGCTACGAGCATTGAGGATGCAACTTGCTGAGAAGTCTAAATGTTCTCTGCAGCTTCAGAAGGAGCT TGCGAGGAGCAGGAGAGGCGGGCAGAGCATGTTCCATTTATTTGAATTAGATGGCTCTGAAGCATTAGGTTCATGTTTGCGGATCAATCCTTGCTCTGAA AATGCTCCAGAACTTTCTGAATGTTCCATTCAATGGTTTCGTCTATCATCTGAAGATGTCAAAAAGGCGCTTATATCAGGAGCAACCAAACCAGTGTATG CTCCAGAGCCTTTTGATGTTGGGCGAGTCCTGCAAGCTGAAATAATTTCTGATGGCCAACAATTCACTTTGACCACTACTTGTGCCATTGATCCTGCTGC TGGTCTCGGAAGCTATGTAGAGGCACTTGTGCGAAAACATGATGTTGAATTCAATGTAGTTGTTACCCAGATGAATGGGTTGGATCATACATCAGAATCT ATTCATGTGCTTCACGTCGGAAAGATGAGGATGAAGCTTCGCAAAGGGAAGTCGACAATTGCTAAAGAGTACTACTCTACTTCAATGCAGCTGTGTGGAG TTAGAGGAGGTGGGAACGCTGCAGCTCAAGCATTGTTTTGGCAAGCAAAGAAAGGGGTTTCCTTTGTATTAGCATTTGAATCAGCAAGAGAGAGGAATGC AGCCATCATGCTTGCAAGGAGGTTTGCTTTTGATTGCAATATTATGCTCGCTGGGCCAGATGACAGAGCTCCTTTAGGAAGTTAA
AA sequence Show only first row Show all	>Potri.001G272300.3 pacid=42792661 polypeptide=Potri.001G272300.3.p locus=Potri.001G272300 ID=Potri.001G272300.3.v4.1 annot-version=v4.1 MTRVTRDFGDTMQKDAVLAVSADVAFASSRFPNYKIGATNQILDAKDDPKVLSMKEVVARETALLLEQQKRLSVRDLASKFEKGLAAAAKLSEEARLREA ASLEKHVLLKKLRDALESLKGRVAGRNKDDVEEAIAMVEALAVQLTQREGELIQEKAEVKKLANFLKQASEDAKKLVDEERAYARAEIESARATVQRVEE ALQEHERMSRALGKQDLEELMKEVQEARRIKMLHQPSKVMDMEHELRALRMQLAEKSKCSLQLQKELARSRRGGQSMFHLFELDGSEALGSCLRINPCSE NAPELSECSIQWFRLSSEDVKKALISGATKPVYAPEPFDVGRVLQAEIISDGQQFTLTTTCAIDPAAGLGSYVEALVRKHDVEFNVVVTQMNGLDHTSES IHVLHVGKMRMKLRKGKSTIAKEYYSTSMQLCGVRGGGNAAAQALFWQAKKGVSFVLAFESARERNAAIMLARRFAFDCNIMLAGPDDRAPLGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.001G272300 [exp]	0	1
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.007G002600 [exp]	8.36	0.8450
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Potri.003G183000 [exp]	13.82	0.8537
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	18.08	0.8447
AT3G53540			unknown protein		Potri.016G080200 [exp]	29.69	0.8324
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.015G099600 [exp]	30.00	0.7955
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	31.81	0.8390
AT1G09000		MAPKKK1, ANP1	MAP KINASE KINASE KINASE 1, NP...		Potri.005G033400 [exp]	32.63	0.8382	Pt-ANP1.2
AT1G38131			O-fucosyltransferase family pr...		Potri.002G087300 [exp]	38.53	0.8032
AT5G56890			Protein kinase superfamily pro...		Potri.006G152000 [exp]	41.89	0.8265
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.001G421200 [exp]	42.07	0.8352

Compare expression of checked genes

Potri.001G272300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.