Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12260 665 / 0 unknown protein AT5G60700 116 / 6e-27 glycosyltransferase family protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G066900 [exp] 1102 / 0 AT5G12260 669 / 0.0 unknown protein Potri.012G121826 [exp] 281 / 5e-92 AT5G12260 156 / 9e-45 unknown protein Potri.009G010900 [exp] 128 / 9e-31 AT5G60700 1170 / 0.0 glycosyltransferase family protein 2 (.1) Potri.004G212000 [exp] 127 / 3e-30 AT5G60700 1167 / 0.0 glycosyltransferase family protein 2 (.1) Potri.012G123450 [exp] 111 / 2e-29 AT5G12260 97 / 2e-25 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036072 [exp] 780 / 0 AT5G12260 620 / 0.0 unknown protein Lus10041317 [exp] 130 / 3e-31 AT5G60700 1204 / 0.0 glycosyltransferase family protein 2 (.1) Lus10037396 [exp] 114 / 6e-26 AT5G60700 1181 / 0.0 glycosyltransferase family protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G272400.1 pacid=42793654 polypeptide=Potri.001G272400.1.p locus=Potri.001G272400 ID=Potri.001G272400.1.v4.1 annot-version=v4.1 ATGGTAGGCCCACCAAGACACTTACTTCTTCCCATCATTCTCACCTCCATTGGTGCCGTCATCCTGTTCTCCCTCCACCAATCCACTCACCCCATCCCTA ACCCTGATTTCATCCCAATCAACACCTTAATCAAGACCCCAAATCCCCAATTCACTCCTCAAGATTTCACGTTCCTAATCAAAGTTCTTGCCTTCAACCG CCTAGACTCACTCTCCAGGTGCCTTAACTCCCTCTCCGCCGCCAACTACGGCGGAGACACTGTCCATCTCCACATCCACATTGACCACTTTGCTCTCACC AATGAACCCATCAACGTTATAGATAAAAAACTTGAGGAATCGCGAAAAGTTTTGAACTTTATTGATGGGTTTGATTGGAAATTTGGAAACAAAGTGGTGC ATTATAGGACTAATAATGTTGGGTTGCAAGCTCAATGGCTAGAAGCTTGGTGGCCAAGTTCAGATCATGAATTTGCGTTTATTGTGGAGGATGATTTGGA AGTTTCGCCGCTGTTTTATAAATTTGTGAGGGGTTTGATTGTTAATTACTATTACAATGCGTCGAATTTTAGTCCTTCTGTCTATGGCGCTTCACTTCAG CGTCCAAGGTTTGTCCCAGGTAAACATGGAAACAAAATACATTTGGATAGTGAAACACATCTTTTCTTGTACCAATTGGTTGGTACTTGGGGTCAGATTC TCTTTCCGAAACCTTGGAAAGAGTTTAGGTTGTGGTATGATCTGCACAAGTCCAAGGGCATCAAGCCATTTCTTGATGGAATGGTGACTAATGGGTGGTA CAAAAGGATGGGAGAAAGAATCTGGACTCCTTGGTTCATTAAATTCATCTACTCTAGAGGTTATTTTAATATCTACACAAATTTTCAGCATGAGAGAGCA CTCAGTGTCTCTCACAGGGATGCTGGTGTTAACTATGGGAAAACTGCTGGGCCTGACTCCCAATTATTGGACGGAAGTTCTCTTGACTTCAACTTACTGG AAATGCAACCACTGAGTAATCTGAAATGGTATGATTACTGCTTTAGAGAAGTTCTTTCTGGAAGGATTGGAAGGACCTTGGATGAAGTTGGGTCTATTCT TCGGACTGTGCAGAAAGATCGGAGTGTTCTGCTTGTGACTATATTTGGGGAATCAGGCACAATCACGAGGAACATGCTTTGCCACTTGGAGAGGCTAAAT ATAAGGAACTATATATTGATAGGCCCTGGGTCTGACTTTCTATTTGATCTTGCTAGAAGAGGGCATCCTGTGATTGATGCTGACCAGTTTTTCAATTATC TCAGAGCACAGAGAGTAATGGGATTTCAACACTCCAGTGCAGAGCTGATGAAGAACGTTTTAGTGAATGGTTATGTAATCAAGAAGTGTTTAGAAGATGG GTATGATTCTTTGACAGTGGATGCAAACGTGCTTTTCCTCAGTAAAGTTCAAGAGTTCATTAATCCTTCCAGTGACATGTGTGCTGGGAAGAGCTTGGGA TTTTTCTTTGTTAGGAGCTCTTCTTCTGCTCAAGAAATTTGGGCTGATCTCCTGAAGAAGGTAGCTGCCACAATAGGTAAGGGTTCGTTACAGGGAGAGA GCACAAATTTTGTATACATTGTGGTGAAATTCTTGGAACAGAATGGTGCAGGAATTCTCAGGGTTGATGAGGCAAGCATTGGCATCCAGATTCGTGCCAA TGCTTTTAACCAATCATCTTTGGAGGCTGGGAAGAAAATGGTTTATTGGTCTACAGACACAAGTTTGGATTTGATTCAAAGGCGGCTTCAAGAATTGAGT TTGTGGGTTGTAGATGGTGACTCTTCTTGCACTGCTGTTGTTTGTCATGTGTCATAG
AA sequence Show only first row Show all	>Potri.001G272400.1 pacid=42793654 polypeptide=Potri.001G272400.1.p locus=Potri.001G272400 ID=Potri.001G272400.1.v4.1 annot-version=v4.1 MVGPPRHLLLPIILTSIGAVILFSLHQSTHPIPNPDFIPINTLIKTPNPQFTPQDFTFLIKVLAFNRLDSLSRCLNSLSAANYGGDTVHLHIHIDHFALT NEPINVIDKKLEESRKVLNFIDGFDWKFGNKVVHYRTNNVGLQAQWLEAWWPSSDHEFAFIVEDDLEVSPLFYKFVRGLIVNYYYNASNFSPSVYGASLQ RPRFVPGKHGNKIHLDSETHLFLYQLVGTWGQILFPKPWKEFRLWYDLHKSKGIKPFLDGMVTNGWYKRMGERIWTPWFIKFIYSRGYFNIYTNFQHERA LSVSHRDAGVNYGKTAGPDSQLLDGSSLDFNLLEMQPLSNLKWYDYCFREVLSGRIGRTLDEVGSILRTVQKDRSVLLVTIFGESGTITRNMLCHLERLN IRNYILIGPGSDFLFDLARRGHPVIDADQFFNYLRAQRVMGFQHSSAELMKNVLVNGYVIKKCLEDGYDSLTVDANVLFLSKVQEFINPSSDMCAGKSLG FFFVRSSSSAQEIWADLLKKVAATIGKGSLQGESTNFVYIVVKFLEQNGAGILRVDEASIGIQIRANAFNQSSLEAGKKMVYWSTDTSLDLIQRRLQELS LWVVDGDSSCTAVVCHVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12260			unknown protein		Potri.001G272400 [exp]	0	1
AT4G01400			unknown protein		Potri.002G179600 [exp]	6.70	0.9185
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.006G214000 [exp]	6.92	0.9191
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.013G011100 [exp]	9.79	0.9125	SYP41.2
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Potri.013G018800 [exp]	9.84	0.9280
AT3G57550		GK-2, AGK2	GUANYLATE KINAS 2, guanylate k...		Potri.016G054200 [exp]	10.53	0.8956	Pt-AGK2.2
AT1G14020			O-fucosyltransferase family pr...		Potri.008G090600 [exp]	10.58	0.9238
AT1G50120			unknown protein		Potri.007G071000 [exp]	12.12	0.9197
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.001G179200 [exp]	16.94	0.9151
AT3G19460			Reticulon family protein (.1.2...		Potri.001G300400 [exp]	19.36	0.9080
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	22.91	0.8959

Compare expression of checked genes

Potri.001G272400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.